Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00065 ATGGGATCATGTCTCTCTGGGGAGCGCAAGAACCGAAAGATCGTTTATTCTGAGATCGCTTCCACTTCTCATAATGATGCCGTTTTTACCCGAAAGAGCTCCAGGAGGAAGATTACGAGAAGAGGTTGTCCCGTTGATGACGCTACAAGGGAGATGTCGCTTCATCGAGTTCCTGGCCGGATGTTTTTGAATGGATCAACTGATAATGCGACGCTCTTTACTAGGCAAGGCAAGAAAGGCGTTAATCAGGACGCTATGATTGTCTGGGAGAATTTTGGTTCAAAAGAAGATGCAACCTTTTGCGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTGCAAAGAAAGTCAGAGATTCTCTTCCTCTAAAACTGAGTGCTCAGTGGGAATTGGACGCTACCAGAGGGAACGGGCAAACTGAGGCGAGATGTCGAGTCTCTCCACCAACGCTGATTAACAAGGACTCTGAAATCTCTCATTGTGATCTTGCTCGTCAGGACGGTTACAATGACATGTATGTCAACTTGAAAGAGTCTTTTCTAAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACATCCTCATATTGATTGCTTTTCCAGTGGTACAACATCAGTTGCTTTGGTCAAACAGGGTCGGGATCTTATCATCGGAAATGTTGGGGACTCGAGGGCTGTATTAGGTACCAGAGATAAATCTAACTCTCTCATTGCAGTTCAGCTGACTGTGGACCTCAAGCCAAATCTTCCAAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTCAAAGTGAGCCTCAGATTTTTCGGGTTTGGCTTCCCAACAGTGATTGTCCTGGTCTTGCTATGGCCAGAGCCTTTGGAGATTTCTGTTTAAAAGACTTTGGCTTGATAGCCGTTCCTGACGTTTCTTATTATCATCTTTCTGAGAAAGATGAATTTGTGGTACTGGCTACAGATGGGGTTTGGGATGTTCTCTCAAATGAAGAGGTTGTGGCAACTGTTGCATCTTCCCCAAGATCCTCTGCAGCTCGTAACCTTGTGGATTCAGCTACTCGAGCATGGAGATGTAAGTACCCTGCTGCCAAGGTGGATGATTGTGCTGTAGTCTGCCTGTTCCTGAACTCTAGTGAGACCACTACAGCGATACCTAAAGAGCAGGAGTTCACTGAGGAAATGGAAACTAAGTTCTCTTAA 1215 45.43 MGSCLSGERKNRKIVYSEIASTSHNDAVFTRKSSRRKITRRGCPVDDATREMSLHRVPGRMFLNGSTDNATLFTRQGKKGVNQDAMIVWENFGSKEDATFCGVFDGHGPFGHMVAKKVRDSLPLKLSAQWELDATRGNGQTEARCRVSPPTLINKDSEISHCDLARQDGYNDMYVNLKESFLKAFKVMDKELKLHPHIDCFSSGTTSVALVKQGRDLIIGNVGDSRAVLGTRDKSNSLIAVQLTVDLKPNLPREAERIRLCKGRIFALQSEPQIFRVWLPNSDCPGLAMARAFGDFCLKDFGLIAVPDVSYYHLSEKDEFVVLATDGVWDVLSNEEVVATVASSPRSSAARNLVDSATRAWRCKYPAAKVDDCAVVCLFLNSSETTTAIPKEQEFTEEMETKFS 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 384030 388631 + Carg04907-RA Car08g00065 152639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00065 404 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 388 - -
Car08g00065 404 SUPERFAMILY PP2C-like 70 381 IPR036457 -
Car08g00065 404 Pfam Protein phosphatase 2C 83 358 IPR001932 -
Car08g00065 404 PANTHER ALPHABET, ISOFORM E-RELATED 1 388 - -
Car08g00065 404 CDD PP2Cc 75 380 IPR001932 -
Car08g00065 404 SMART PP2C_4 58 378 IPR001932 -
Car08g00065 404 Gene3D - 64 383 IPR036457 -
Car08g00065 404 ProSiteProfiles PPM-type phosphatase domain profile. 69 380 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01358 Car-Chr1:12004334 Car08g00065 Car-Chr8:384030 1.12E-93 dispersed
Car05g00767 Car-Chr5:5959827 Car08g00065 Car-Chr8:384030 1.18E-165 dispersed
Car08g00065 Car-Chr8:384030 Car11g00833 Car-Chr11:4987580 3.65E-153 dispersed
Car17g00548 Car-Chr17:5108119 Car08g00065 Car-Chr8:384030 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00065 - - csv:101222320 645.966