Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00073 ATGAAGAAGGTCTTTGGTCAGACTGTCAGGGATATCAAGAGGGAGGTCAATAAGACGGTGCTTAAAGTTCCTCGATTGGAGCAGAAGGTTCTTGATGCTACTAGCAATGAGCCTTGGGGCCCCCATGGAACACTTCTTGCAGAGATTGCTCAAGCAAGCAAAAATTATCATGAGTGTCAGATGATCATGGCAGTTGTTTGGAAGCGTGTTAATGACTCTGGCAAAAATTGGCGGCATGTATACAAGGGTTTAACTGTCTTGGAGTATCTGGTGGCTCATGGATCCGAACGAGTAATAGACGAAATCAAGGATCATGCATACCAATTATCAGGCTTGTCCAGCTTTCAATATATTGATTCCAGTGGAAGGGATCAAGGATCAAATGTACGAAAGAAGTCGCAGAGTCTTGTGCTGCTAGTGAATGATTCTGAAAGAATCAGTGAGATTAGGCAGAAGGCTAATACCAACAGGGACAAGTTTCGAAGTGCATCATTAGCTGGTGGAGCATATAGGCCAAACTCCAATGCTGGGGGGTATGGAGACCGTTATGATGATGATTATAATGAGGGACGCTATAGAAGCAGGGACGAAGATAGGAATAGCAATGGTTATGGAAGGGAAAGAGAATATGACTATAGAGCTGATGACCGCGGGAGGAATTCTGACTCAAATATACGCGATAGAGATCAATATAGGAGAGATGGTGAAGAACGCTATGGAAAAGATAGTCCCAGGGATGGTGATAGTTGGGGACGAAGAAGTGTTGATGATCACCGATATGGTTCAAGAAGGGATCAAGATAATGATCATGATGACAATGCACGTGATGGTAGTGGAAGAGGTGATGATAGGTCTCCAGACGTGAGGCGGCATGATCATAAATTTTCAGAGCAAGACACTGGTGCACCTCCTAGTTATGAAGAGGCAGTGAACGAGTCTCAAAGCCCACCAGCTCATAATGATAGGGACCAAGAAACCTCAAACTCTGCTCCTGCTACTTCATCTGCGCCTGTTACCAGTGCACCTAGCCAGTCAAGTCCCGTTCCTGGTACTCCAACATCTGGAAACCAGTTAATTGGGTCCTTCGATGCATTTGATCCTCGCAGTTCAGTCACAGGAACTTCCCCTCTTTTTTCAGCTGCTCCAACTGTTCTACCAAACAATACTGAGATGGACTTACTTGGCTCACTGACGGATTTTCCTTCAAACCCATTGGCCATTATGCCAGTGGCATCTGCAAACGTGACTGGAGCCTTCGAGCCTGATTCCCACATGAACTCTGGTGCAGGAACCTCGCACGCTATTATGTCAGTAGCTAGTGTCAGTAATCAGAGTTTTGAAGATCCTTTTGGCGACACTCCTTTTAAAGCTATGCTTTCTGATGATGGTGCCCCTCAATTCCATTCTTCTGCTACGACAGATTCTCTCCAGTCTTCCCTGCATCAAAGCCTTGGTCAACCCCAACCTTCTTCCATGACAGATCCTCTCCAGTCTTCCCTACACCAAAACCTTGGACAATCTCATCCTTCTACTATGACAGATCCTTTCCAGTCTTCTCTGCACCAAGGCCTTGGACAATCCCAAGGAGCTACACCGGAAACAAACCAAGTCTCTACTTCTGAATTTAGTAATGGATTTTCTGCTTCAACTGGTGCATCTGACTTATCCAGTTTGCAAGCACCATCAGACCCACAGTTTCTTCCAGGGCCATCCACTATTCCAGAACCCGAGATCGATATACTGGCAGATATTCTACCTCCTTCTGGACCTCCATCTAACACAGCATCCCTGCCAACTTATTCATTCCCCAGCGACCAGCCTGCGTTGCCTACTCCCTTCTCAGATCCTGCTCAACCTCACCAAAATTTTACAGCTTTAAGCAATCAGCCTTCAAAACCAAATGATTGCTCCGTCCTTAATTTGCAACCCCAACCAGGAACTACGGCACCTTTGTACTCAAATATGGCTTTCCCGCCTCAAAGTGCACCTACTGGACAGCTTGGATATGGTGCCTCACAGGGAGGATCTGCAGCACCTACTGGACAGTTTGGCTATGGGATGGCCCCACAGGGAGGATCTACAGCACCCACTGGACAGCATGGCTATGGGGGTCCACAGGGGGGATCTACCACCACTGGACAGCATGGCTATGGGGGTCCACAGGGGGGATCTACGGCACCTACTGGACAGCATGGCTATGGGGGTCTCTACGGGACAGCATGGCTATGGGGTTCAAATCCGCAGGCTAATGGTGGTGGAGGCTATTTTATAGAGAATGTAGGATCTGCTGCTTCTGTTACGACACAAATTGCTCAGCAAAATCCAAGTGGGCCAGCTGCTCCACTTGGCAGTGGAAACATGCAGCATCATGGCGTTACATCCCAGCCATTAGCTTCACATGGAGCTTATCAGGTACAAAATGGACATGCTGCACAGCCAAGGAGTGATGATTTTCTGGGCAGCATTCTTCCGCAAGCTGCGCCCCCTCAAGTTCCGTTACAACAAGGTTTTCCAACCTTAACAGATTCACTCTCAATAGCATCTCAACCGTCTAAGGGCAAGTTTGAGACAAAGTCAACAGTCTGGACCGACACTCTTAACAGAGGGCTAGTTGATTTGAACATATCTGGCCCTAAAACAAATCCACTGGCAGACATTGGAGTGGATTTTGATTCCATAAATCGGAAAGAGAAGAGGATGGAAAAACCTACTACAACTGCAGTGACTTCTACTATCACCATGGGTAAAGCTATGGGATCTGGTTCTGGAATGGGTCGTGCCGGTGCGGGTGCCCTCAGAGCTCCATCGAACCCAATGGTGAGTTCAGGTATGGGTATGAACAATGTTGGCATGGGAGGTCCCTACGGAGGAATCAATCAACCCATGGGAATGGGAATGGGTATGGGTATGGGTATGAACAATGCTGGTATGAATCCGGGAATGGGGATGAGCATGAACCCTGGGATGGGAATGAACCAGGGCATGAACCCTGGGATGGGAATGGGAATGAACCCGGGTATGAACCCTGGGATGGGAATGAACCCTGGGATGGGAATGAACCCAGGTATGGGAATGAACCCTGGGATGGGAATGAACCCAGGTATGGGAATGAATATGGGTATGGGACAAGGAATGCAATTCCAACCACCAGGTGGATATCAGCTGGCATCGAATGCTTCGGGTAGTTATAATCCAATGATGAGTGGGTACGCCCCCCAACAATCATATGGTGGTGGCTACCAA 3243 47.89 MKKVFGQTVRDIKREVNKTVLKVPRLEQKVLDATSNEPWGPHGTLLAEIAQASKNYHECQMIMAVVWKRVNDSGKNWRHVYKGLTVLEYLVAHGSERVIDEIKDHAYQLSGLSSFQYIDSSGRDQGSNVRKKSQSLVLLVNDSERISEIRQKANTNRDKFRSASLAGGAYRPNSNAGGYGDRYDDDYNEGRYRSRDEDRNSNGYGREREYDYRADDRGRNSDSNIRDRDQYRRDGEERYGKDSPRDGDSWGRRSVDDHRYGSRRDQDNDHDDNARDGSGRGDDRSPDVRRHDHKFSEQDTGAPPSYEEAVNESQSPPAHNDRDQETSNSAPATSSAPVTSAPSQSSPVPGTPTSGNQLIGSFDAFDPRSSVTGTSPLFSAAPTVLPNNTEMDLLGSLTDFPSNPLAIMPVASANVTGAFEPDSHMNSGAGTSHAIMSVASVSNQSFEDPFGDTPFKAMLSDDGAPQFHSSATTDSLQSSLHQSLGQPQPSSMTDPLQSSLHQNLGQSHPSTMTDPFQSSLHQGLGQSQGATPETNQVSTSEFSNGFSASTGASDLSSLQAPSDPQFLPGPSTIPEPEIDILADILPPSGPPSNTASLPTYSFPSDQPALPTPFSDPAQPHQNFTALSNQPSKPNDCSVLNLQPQPGTTAPLYSNMAFPPQSAPTGQLGYGASQGGSAAPTGQFGYGMAPQGGSTAPTGQHGYGGPQGGSTTTGQHGYGGPQGGSTAPTGQHGYGGLYGTAWLWGSNPQANGGGGYFIENVGSAASVTTQIAQQNPSGPAAPLGSGNMQHHGVTSQPLASHGAYQVQNGHAAQPRSDDFLGSILPQAAPPQVPLQQGFPTLTDSLSIASQPSKGKFETKSTVWTDTLNRGLVDLNISGPKTNPLADIGVDFDSINRKEKRMEKPTTTAVTSTITMGKAMGSGSGMGRAGAGALRAPSNPMVSSGMGMNNVGMGGPYGGINQPMGMGMGMGMGMNNAGMNPGMGMSMNPGMGMNQGMNPGMGMGMNPGMNPGMGMNPGMGMNPGMGMNPGMGMNPGMGMNMGMGQGMQFQPPGGYQLASNASGSYNPMMSGYAPQQSYGGGYQ 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 428200 437601 - Carg04915-RA Car08g00073 152647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00073 1081 Pfam ENTH domain 26 145 IPR013809 -
Car08g00073 1081 MobiDBLite consensus disorder prediction 452 635 - -
Car08g00073 1081 MobiDBLite consensus disorder prediction 773 827 - -
Car08g00073 1081 MobiDBLite consensus disorder prediction 615 635 - -
Car08g00073 1081 MobiDBLite consensus disorder prediction 692 723 - -
Car08g00073 1081 ProSiteProfiles ENTH domain profile. 18 150 IPR013809 -
Car08g00073 1081 MobiDBLite consensus disorder prediction 688 723 - -
Car08g00073 1081 MobiDBLite consensus disorder prediction 151 367 - -
Car08g00073 1081 MobiDBLite consensus disorder prediction 594 608 - -
Car08g00073 1081 MobiDBLite consensus disorder prediction 307 360 - -
Car08g00073 1081 MobiDBLite consensus disorder prediction 182 298 - -
Car08g00073 1081 MobiDBLite consensus disorder prediction 773 811 - -
Car08g00073 1081 MobiDBLite consensus disorder prediction 465 566 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00073 K12471 EPN; epsin - csv:101209356 1352.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01388 Car08g00073 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00203 Car-Chr4:1115143 Car08g00073 Car-Chr8:428200 1.42E-08 dispersed
Car06g01388 Car-Chr6:9979136 Car08g00073 Car-Chr8:428200 4.78E-50 dispersed
Car08g00073 Car-Chr8:428200 Car14g01330 Car-Chr14:11246969 1.45E-37 dispersed
Car17g00540 Car-Chr17:5040410 Car08g00073 Car-Chr8:428200 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1120 . . . . . . . . Cmo08g00091 . Cma06g01633 . Car06g01388 . . Cpe08g00095 . . . . . . . . . . . . . . . . Cone15ag0602 . . . . . . . . . . . . . . . Cmo06g01632 . . . Car08g00073 . . Cpe17g00997 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007301 0 3 0 0 0 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 9 1 0 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g00073 Car_Chr08 FPKM 27.222891 28.371145 11.876627 12.803165 17.026495 16.1884 15.981373 13.778223 14.302507 12.542478