Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00096 ATGGAGTTGGATGGCCTCGAACGCGCGCCGCCGTCCATGGACGTGATGAACGAGGAGGACAAGACCCTTCAATGTCACTGTCAGTTTCCGTCGATTTCCAAGCCTCGGATCAGCAATAACGACAATCCGACCACTACAAGTGTCCACGAGCTGCTGGAATGTCCTGTCTGCACTAACTCTATGTATCCTCCAATTCATCAGTGTCCCAATGGACATACCCTCTGTTCTTCGTGTAAAACGAAGGTAGACAACCGTTGCCCGACGTGCAGACAAGAGCTCGGTGATATTAGATGTCTAGCATTAGAAAAAATAGCCGAATCGCTTAAACTGGCTTGTAAATTCTGCACGTTCGGGTGCTCGGAGATATTGCCGTACTATAGTAAACTAAAACATGAATCTGCCTGTTACTTCAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAATTGATGGGGAGATTCCTTTCCTTGTTTCTCATCTTCGAGATGATCACAAAGTCGATATGCATTCTGGATGCACGTTTAATCATCGTTACGTAAAGGCTAATCCATGCGAAGTTGAAAACGCTATATGGATGTTAACTGTCTTCCACTGTTTTGACCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTTGGTATGGCACCAGTTTACATGGTGTTTCTCCGATTCATGGGCGACGAAACAGACGCCCGAAACTACAGTTACAGCCTCGAGGTCGGTGGGAATGGGAGGAAGCTAACGTGGGAAGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTCCGAGACAGCCACGATGGCCTCATTATACATCGAAACATGGCACTGTTCTTCTCGGGCGGGGAAAGGAAAGAGCTGAAGTTGCGGATCATGGGACGGATTTGGAAAGAACAAAATAAACAGTGA 918 47.17 MELDGLERAPPSMDVMNEEDKTLQCHCQFPSISKPRISNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTKVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCSEILPYYSKLKHESACYFRPYTCPYAGSDCPIDGEIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENAIWMLTVFHCFDQYFCLHFEAFQLGMAPVYMVFLRFMGDETDARNYSYSLEVGGNGRKLTWEGNPRSIRDNHKKVRDSHDGLIIHRNMALFFSGGERKELKLRIMGRIWKEQNKQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 556330 558330 + Carg04939-RA Car08g00096 152670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00096 305 Pfam Seven in absentia protein family 96 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Car08g00096 305 ProSiteProfiles Zinc finger RING-type profile. 54 90 IPR001841 -
Car08g00096 305 ProSiteProfiles Zinc finger SIAH-type profile. 107 167 IPR013010 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02220 Car-Chr4:18032859 Car08g00096 Car-Chr8:556330 5.06E-19 dispersed
Car08g00096 Car-Chr8:556330 Car18g01246 Car-Chr18:11869814 5.07E-165 dispersed
Car17g00506 Car-Chr17:4494282 Car08g00096 Car-Chr8:556330 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00096 K04506 - csv:101209363 614.764