Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00100 ATGACGCTTTCAGAGCAGAATCCGGCGGAGTTTCGCAAAGGTTTGGAAGGTGAGGGTCTGTTTGAGGAGCTATGGAAGGCTTGTGCAGGGCCTCTTGTTGAAGTTCCTTTCAATGGAGAGAGGGTTTTTTACTTCCCTCAAGGGCATATGGAACAACTGGAAGAGTCGACAAATCATGAACTCAATCACCAAATCCCTCATTTTGATCTTCCTTCTAAGATCCTCTGTCGTGTCGTGAACATTCGTTTGTTGGCTGAAAAGGAAACGGATGAGGTCTATGCTCAAATCACTTTACAACCAGAAGCTGATCAAAGTGAGCCGCAATGCCCTGATCCAGAGCCGCCTGAGCGGACAAGGCCAACTGTTCATTCTTTTTGTAAGATTTTGACAGCTTCTGATACTAGCACTCATGGAGGTTTCTCTGTTCTTAAAAAACATGCCACTGAATGCCTTCCTCCCCTTGACATGAGTCAGTCCACCCCAACTCAGGAGCTAGCTGCCAAGGATCTTCATGGACATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCACGGAGGCATTTGCTAACGACAGGGTGGAGTACGTTCGTTGTATCGAAACGACTCGTTGCTGGGGATGCCTTTGTGTTCTTAAGGGGTGACAATGGGGAACTAAGAGTCGGGGTTCGACGACAGGCTCGACAGAAGAGTGTGATGCCTTCCTCTGTGATATCTAGCCATAGTATGCATCTTGGAGTTCTTGCTACTGCTTCTCATGCTGTTCGTACGCAGACATTTTTCGTCGTGTATTATAAGCCGAGAACTAGCCAATTCATCATCGGCTTAAACAAATACTTGGAAACGATCAAGAACAGATATGAAGTCGGGATGCGTTTTAAGATGAGATTTGAAGGAGAGGAATCACCGGAGAGAAGGTTCACTGGTACTATTGTTGGTGTTGGAGACATATCCCCAGTTTGGTCTGATTCTAAATGGCGATCACTGAAGATTCAATGGGATGAAGCTGCTGCAATCCAGAGGCCCGAGCGAGTTTCTCCGTGGGAAATCGAACCGTTTGTACCGTCTGCGTCCTTAAACTTCACTCATCCATCCATAAAGAGTAAGAGGGCTCGACCCGTCGAGGTTCCTCCTCCTGGTAAGCGGGAAAACGAGTTGCTTTTTCGTTCGAAAAGGCTAGCTTCTTCCTTGTCATTATGTTTGATTCCAATGTATGTTGATTGTGGGGTTGTAGAGAACACTTCTAGCTCGACTCCTACGGGTTTTTGGCTTCACGGATCGACGATTCCTCACGAGATACCCCAACTAAGTGGTGCTAATGATGTTCCGAGCAGCGGTAACCAGGTTGTTTGGTCTCTCTGGCAGCAAACGCTCGATGTCAATGTCGATAGCAGTCGAAGCCACTGCAATCCAATGGCACATGTTGAAGGCATTTGGCCTTCTCCTCCTCCTCCACTCTGTAATAACTCCCTGAAGCCTCTTCCCTCCCCTTATTCTCCATCCAGTACTTCAAAGCCTAGCAGTGAGCTCATTGAGCACGATCAATCGGAGAAAGGGAATAAACCCGACATCTCTCTCGGCTGCCGAATATTCGGGATCGATTTGAAAAAGAACTCTAGCATTGTCCCTTCCTTGGAGAAGAAATCGTGTTGCCAAACTACGGTGGCCACCGACATTGCCAAGGATCCAGTACCGATAGCTGCTGTGACATCTCAAGCCGATGCAGGAAAGGAGCAGCAGCAAGTTGCATCAGAGCTGTCGATGAAAGGAACACAGACGAATCACATTCCGAATTCATCGTCGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCTGTCGGTCGAGCAGTTGACTTAACGACACTGAAAGGGTACGAAGATCTCATAGACGAACTCGAGAACGTGTTCGAAATAAAAGGAGAACTTCGCGAAATGAACAAGTGGTCTATCGTTTTCACCGACGATGAATACGACATGATGCTCGTGGGGGATGATCCATGGCCAGAATTCTGCCAGATGGTGAAGAGGATCTTTATATACTCGAGCGAAGAAGTTAAGACGATGAGTAGCAACAGCAAGCTCGTTTCGCCACCATCCTTAGATAGCTTGGATTCAGAGCGCAAGACAGAATCCTAA 2139 47.12 MTLSEQNPAEFRKGLEGEGLFEELWKACAGPLVEVPFNGERVFYFPQGHMEQLEESTNHELNHQIPHFDLPSKILCRVVNIRLLAEKETDEVYAQITLQPEADQSEPQCPDPEPPERTRPTVHSFCKILTASDTSTHGGFSVLKKHATECLPPLDMSQSTPTQELAAKDLHGHEWKFKHIFRGQPRRHLLTTGWSTFVVSKRLVAGDAFVFLRGDNGELRVGVRRQARQKSVMPSSVISSHSMHLGVLATASHAVRTQTFFVVYYKPRTSQFIIGLNKYLETIKNRYEVGMRFKMRFEGEESPERRFTGTIVGVGDISPVWSDSKWRSLKIQWDEAAAIQRPERVSPWEIEPFVPSASLNFTHPSIKSKRARPVEVPPPGKRENELLFRSKRLASSLSLCLIPMYVDCGVVENTSSSTPTGFWLHGSTIPHEIPQLSGANDVPSSGNQVVWSLWQQTLDVNVDSSRSHCNPMAHVEGIWPSPPPPLCNNSLKPLPSPYSPSSTSKPSSELIEHDQSEKGNKPDISLGCRIFGIDLKKNSSIVPSLEKKSCCQTTVATDIAKDPVPIAAVTSQADAGKEQQQVASELSMKGTQTNHIPNSSSRTRTKVQMQGVAVGRAVDLTTLKGYEDLIDELENVFEIKGELREMNKWSIVFTDDEYDMMLVGDDPWPEFCQMVKRIFIYSSEEVKTMSSNSKLVSPPSLDSLDSERKTES 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 581618 584968 + Carg04943-RA Car08g00100 152674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00100 712 MobiDBLite consensus disorder prediction 98 120 - -
Car08g00100 712 MobiDBLite consensus disorder prediction 490 523 - -
Car08g00100 712 MobiDBLite consensus disorder prediction 492 509 - -
Car08g00100 712 MobiDBLite consensus disorder prediction 586 606 - -
Car08g00100 712 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Car08g00100 712 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677
Car08g00100 712 ProSiteProfiles PB1 domain profile. 602 683 IPR000270 GO:0005515
Car08g00100 712 Pfam AUX/IAA family 589 687 IPR033389 -
Car08g00100 712 Pfam Auxin response factor 251 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car08g00100 712 MobiDBLite consensus disorder prediction 689 712 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00622 Car-Chr4:3574810 Car08g00100 Car-Chr8:581618 0 dispersed
Car08g00100 Car-Chr8:581618 Car15g01164 Car-Chr15:9141928 0 dispersed
Car08g00100 Car-Chr8:581618 Car16g00472 Car-Chr16:3011343 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3925 PF02309 AUX_IAA 2.20E-10 CL0072 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00100 K14486 - csv:101205805 1055.82