Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00136 ATGGCGACCGTTAATCCATTTGATTTGTTGGGAGATGATGACGCCGAGGATCCGTCGCAGCTAATTGCGGCTAAGAAGGTGGCGGCAGTGACGTCGCCGGCGCCGAAGAAAGGTCCTGCCCAGAACAAACCGGCGGCTTTGGGGGCTCAGCAGAACAAGCCTGCTAGTCTTCCTTCAAAGCCTCTTCCTCCTGCACAGGCTGTAAGAGAAGCAAGGAATGAAGGCGGTCGTGGAGGTCGTGGCAGTGGGCGAGGTGTAGGGCGTGGTTATGGGCGAGGCCGTGAAGGCAGTGGCTTCGTTCGTGGTTCTTTCAATAATGAGAACATCAGTGCAGCTGAAGATGGAGAGACAGGAAAGACAACCGAAAGGCGTGGGTATGGTGGTCCACGTGGTCGTGGTGGCCGACGTGGTGGTTTCAATAATGGAGAGGCTGCTGATGGGGAGCGCCCTCGTAGAGTATTTGAGCGCCACAGTGGAACTGGCCATGGAAATGAATTTAAACGTGAAGGATCTGGTCGTGGTAATTGGGGAAGGCCAACTGAAGAATTTGCTGAGACTGTGGAGGAAGCTGTTAATGAAATGGAAAAGAACATGGGTGATGAGAAGCCTGTTCAAGAGGATAATGCTGAAGGAGTCAACACAGAGAACGCTGCTAAAGAACCGGAGGAAACAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTATGAAAAGTTGCTTGAAGAGAAAAGGAAGGCCCTTATGGCACTAAAAACTGAGGAAAGGAAGGTGGATCCAAAAGAATTTGCATCCATGCAACAACTTTCATGCAAGAAGGAGAACAACGACATATTTATTAAATTGGGATCTGAGAAGGATAAGCGAAAAGAGATTGCGGATAAAGAAGAGAGAACTAAGAAGTCTTTGAGCATCAATGAGTTCTTGAAGCCTGCGGAAGGTGAGAGACACTACGGCTCAGGTGGCCGGGGAAGGGGTCGTGGTGGCCGTGGTTCAAGGGGAGGATACAGTGGCAACTCGATCAGCAACGTTCCAGCCCCATCCATTGAGGACCCTGGGCAGTTCCCTACCTTAGGTGCGAATTTGGAAATGGCGACCGTTAATCCATTTGATTTGTTGGGAGACGATGATGCTGAGGACCCGTCGCAGCTAATTGCGGCTAAGAAGGTGGTGGCGGCGCCGCCTAAGAAAGGTCCTGTCCAGACCAAACCGGCGGCTTTGGGTGCTCAGCAGAACAAGGCTGCTAGTCTTCCTTCAAAGCCTCTACCTCCTGCACAGGCTGTAAGAGAAGCAAGGAATGAAAGCAGTCGTGGAGGTCGTGGCAGTGGACGAGGTGGAGGACGTGGTTATGGGCGAGGCCGTGAAGGCTCTGGCTTCAATCGTGGCTCTTTCAATAATGAGAGCAGCAGTGCAGCTGAAGATGGAGAGACGGGAAAGACAACTGAAAGGCGTGGATATGCTGGGCCTCGTGGCCGTGGTGGCCGTCGTGGTGGTTTCAATAATGGAGAGGCTACTGATGGGGAACGCCCTCGTAGAGTATTCGAGCGCCACAGTGGAACTGGCCATGGAAATGAATTTAAACGTGAAGGATCTGGTCGTGGTAATTGGGGAAGGCCAACTGAAGAATTTGCTGAGGCTGCTGAGGAAGCTGTTAATGAAACGGAAAAGAACATGGGTGATGAGAAGCCTGTTCAAGAGGATGATACCGGAGATGTCAACGCAGAGAACTCTGCTAAAGAACCAGAGGAAACAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTATGAAAAGTTGCTTGAGGAGAAAAGGAAGGCTCTTCTGACACTAAAAACTGAGGGAAGGAAGGTAGATCCTAAAGAATTTGCATCCATGCAACAACTTTCATGCAAGAAAGAGAACAACGACATATTTATTAAATTGGGATCTGAGAAGGATAAGCGAAAAGAAATTGCCGAGAAAGAGGATAGAACAAAGAAGTCTTTGAGCATTAACGAGTTCTTGAAGCCTGCGGAAGGGGAGCGACACTATGCCCCTGGTGGCCGGGGAAGGGGCCGTGGCCGAGGTTCAAGGGGAGGAGGAGGAGGATACAGTGGCAACTCGACAATCAATGTTGCAACCCCATCCATCGAGGACCCTGGGCAGTTCCCAACCTTAGGGGCTAAGTGA 2166 50.83 MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSKPLPPAQAVREARNEGGRGGRGSGRGVGRGYGRGREGSGFVRGSFNNENISAAEDGETGKTTERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEKLLEEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERTKKSLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLGANLEMATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKGPVQTKPAALGAQQNKAASLPSKPLPPAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAAEDGETGKTTERRGYAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGRGNWGRPTEEFAEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTLEEYEKLLEEKRKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAEKEDRTKKSLSINEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNSTINVATPSIEDPGQFPTLGAK 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 830408 839678 - Carg04980-RA Car08g00136 152710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00136 721 Pfam Stm1 1 81 IPR019084 -
Car08g00136 721 Pfam Stm1 363 440 IPR019084 -
Car08g00136 721 MobiDBLite consensus disorder prediction 101 115 - -
Car08g00136 721 MobiDBLite consensus disorder prediction 195 232 - -
Car08g00136 721 MobiDBLite consensus disorder prediction 29 181 - -
Car08g00136 721 Coils Coil 592 612 - -
Car08g00136 721 MobiDBLite consensus disorder prediction 458 474 - -
Car08g00136 721 MobiDBLite consensus disorder prediction 286 356 - -
Car08g00136 721 MobiDBLite consensus disorder prediction 504 534 - -
Car08g00136 721 MobiDBLite consensus disorder prediction 286 321 - -
Car08g00136 721 Coils Coil 233 256 - -
Car08g00136 721 MobiDBLite consensus disorder prediction 384 592 - -
Car08g00136 721 MobiDBLite consensus disorder prediction 541 592 - -
Car08g00136 721 MobiDBLite consensus disorder prediction 145 175 - -
Car08g00136 721 Pfam Hyaluronan / mRNA binding family 150 257 IPR006861 -
Car08g00136 721 Pfam Hyaluronan / mRNA binding family 509 616 IPR006861 -
Car08g00136 721 MobiDBLite consensus disorder prediction 649 680 - -
Car08g00136 721 MobiDBLite consensus disorder prediction 216 232 - -
Car08g00136 721 MobiDBLite consensus disorder prediction 694 710 - -
Car08g00136 721 MobiDBLite consensus disorder prediction 649 721 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01024 Car08g00136 CCT
Car08g00136 Car14g01737 CCT
Car08g00136 Car17g00511 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00136 Car-Chr8:830408 Car20g00869 Car-Chr20:7895202 0 dispersed
Car08g00136 Car-Chr8:830408 Car19g00295 Car-Chr19:4384483 2.79E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00136 K13199 - sspl:121803693 560.451