Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00154 ATGGGTGAAGGATCAATGGATGACATCGAAGGAACTAGAGTTACTTTGATCGAGTCGTTGTCGTCGTCGTCTTCGAGATTAACGAAGAGGTCACGTACCCCTTATAACGGACCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAGTGCAGGGACTATCATCGTCGCCATAAAGTGTGCGAGTTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCGGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTCTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGCAACGATAACGCTTAATGCAGGACGATTTCTCTATAGCAACCAAGGTCCAAGATTCTTACCATTTGGTAACCAGTTACTGTCTACTGGCAATGATTTGAGCTCATCTTGGATCGGAATGATCAAGCCCGAGCATAACGACGCTCTTTGCAGCAGCAACTCACAGCTCGACATTGCTGACAGAAGAAAAAGTATGTTTCCCGGGCTGTCGGGCTGTGATTACAAAGAAAAACAGCCGCCATTTCTCAATGTTGGATCCAACAACGTTGGGAATGTTCAGAAAGTGGTGGGAAATGGCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGGCTGGGGAGATTAATAATCTAACCTCCATGGTCCAATCCAACCTCATCCCCTCATCCCATTTTGTCCATAGCGACGGTCTTGGCTTCGAGAGTGACCTCGTTAGTCCTCGTTTGGTCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCGATGTTCGAGGACGGACCTGATGGATCATCCATAGATTTATTCAGGTTTTGA 894 47.65 MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADRRKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMVQSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 927995 930717 + Carg04999-RA Car08g00154 152728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00154 297 ProSiteProfiles Zinc finger SBP-type profile. 40 117 IPR004333 GO:0003677
Car08g00154 297 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 243 IPR044817 GO:0003677
Car08g00154 297 Pfam SBP domain 43 116 IPR004333 GO:0003677
Car08g00154 297 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED 22 243 - -
Car08g00154 297 Gene3D - 35 104 IPR036893 GO:0003677|GO:0005634
Car08g00154 297 SUPERFAMILY SBT domain 41 122 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00154 Car-Chr8:927995 Car13g00660 Car-Chr13:8113900 1.65E-51 dispersed
Car17g01323 Car-Chr17:9901582 Car08g00154 Car-Chr8:927995 1.52E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3932 PF03110 SBP 1.40E-28 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00154 - - csv:101217032 461.455