Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00154 ATGGGTGAAGGATCAATGGATGACATCGAAGGAACTAGAGTTACTTTGATCGAGTCGTTGTCGTCGTCGTCTTCGAGATTAACGAAGAGGTCACGTACCCCTTATAACGGACCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAGTGCAGGGACTATCATCGTCGCCATAAAGTGTGCGAGTTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCGGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTCTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCTGCAACGATAACGCTTAATGCAGGACGATTTCTCTATAGCAACCAAGGTCCAAGATTCTTACCATTTGGTAACCAGTTACTGTCTACTGGCAATGATTTGAGCTCATCTTGGATCGGAATGATCAAGCCCGAGCATAACGACGCTCTTTGCAGCAGCAACTCACAGCTCGACATTGCTGACAGAAGAAAAAGTATGTTTCCCGGGCTGTCGGGCTGTGATTACAAAGAAAAACAGCCGCCATTTCTCAATGTTGGATCCAACAACGTTGGGAATGTTCAGAAAGTGGTGGGAAATGGCTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGGCTGGGGAGATTAATAATCTAACCTCCATGGTCCAATCCAACCTCATCCCCTCATCCCATTTTGTCCATAGCGACGGTCTTGGCTTCGAGAGTGACCTCGTTAGTCCTCGTTTGGTCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCGATGTTCGAGGACGGACCTGATGGATCATCCATAGATTTATTCAGGTTTTGA 894 47.65 MGEGSMDDIEGTRVTLIESLSSSSSRLTKRSRTPYNGPQVPSCMVDGCSSDLSKCRDYHRRHKVCEFHSKTPKVTICGREQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATITLNAGRFLYSNQGPRFLPFGNQLLSTGNDLSSSWIGMIKPEHNDALCSSNSQLDIADRRKSMFPGLSGCDYKEKQPPFLNVGSNNVGNVQKVVGNGCALSLLSTPVEAGEINNLTSMVQSNLIPSSHFVHSDGLGFESDLVSPRLVSDGSSDANIRCYSMFEDGPDGSSIDLFRF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 927995 930717 + Carg04999-RA Car08g00154 152728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00154 297 ProSiteProfiles Zinc finger SBP-type profile. 40 117 IPR004333 GO:0003677
Car08g00154 297 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 22 243 IPR044817 GO:0003677
Car08g00154 297 Pfam SBP domain 43 116 IPR004333 GO:0003677
Car08g00154 297 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED 22 243 - -
Car08g00154 297 Gene3D - 35 104 IPR036893 GO:0003677|GO:0005634
Car08g00154 297 SUPERFAMILY SBT domain 41 122 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00154 - - - csv:101217032 461.455
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00154 Car-Chr8:927995 Car13g00660 Car-Chr13:8113900 1.65E-51 dispersed
Car17g01323 Car-Chr17:9901582 Car08g00154 Car-Chr8:927995 1.52E-150 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car14g00872 CST 181 1002 SBP-box Gene Family AT2G47070 55.7 2.1e-239 825.9
Car01g00236 CST 179 1005 SBP-box Gene Family AT2G47070 53.3 2.5e-224 775.8
Car14g00872 CST 25 1002 SBP-box Gene Family AT3G60030 54.3 3.5e-276 948.3
Car01g00236 CST 26 1005 SBP-box Gene Family AT3G60030 52.9 1.2e-260 896.7
Car18g00237 . 64 181 SBP-box Gene Family AT5G50570 66.9 9.7e-41 164.9
Car17g01323 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Car08g00154 . 18 156 SBP-box Gene Family AT5G50570 58.2 4.5e-38 156.0
Car11g01303 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Car14g00662 CST 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Car14g01485 CST 19 344 SBP-box Gene Family AT5G18830 51.3 2.6e-81 300.8
Car14g00872 CST 181 1002 SBP-box Gene Family AT2G47070 55.7 2.1e-239 825.9
Car01g00236 CST 179 1005 SBP-box Gene Family AT2G47070 53.3 2.5e-224 775.8
Car14g01485 CST 19 344 SBP-box Gene Family AT5G18830 51.3 2.6e-81 300.8
Car14g00872 CST 25 1002 SBP-box Gene Family AT3G60030 54.3 3.5e-276 948.3
Car01g00236 CST 26 1005 SBP-box Gene Family AT3G60030 52.9 1.2e-260 896.7
Car18g00237 . 64 181 SBP-box Gene Family AT5G50570 66.9 9.7e-41 164.9
Car17g01323 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.4e-39 161.0
Car08g00154 . 18 156 SBP-box Gene Family AT5G50570 58.2 4.5e-38 156.0
Car11g01303 CST 63 166 SBP-box Gene Family AT5G50570 67.3 1.3e-37 154.5
Car14g00662 CST 55 169 SBP-box Gene Family AT5G50570 64.1 3.8e-37 152.9
Car18g00237 . 64 181 SBP-box Gene Family AT5G50670 66.9 9.7e-41 164.9
Car17g01323 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.4e-39 161.0
Car08g00154 . 18 156 SBP-box Gene Family AT5G50670 58.2 4.5e-38 156.0
Car11g01303 CST 63 166 SBP-box Gene Family AT5G50670 67.3 1.3e-37 154.5
Car14g00662 CST 55 169 SBP-box Gene Family AT5G50670 64.1 3.8e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3932 PF03110 SBP 1.40E-28 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g00154 Car_Chr08 FPKM 1.010152 1.877887 0.18684 0.73464 4.118668 3.993027 4.242199 0.0 0.0 0.0
Car08g00154 Car_Chr00 FPKM 7.848958 5.195671 8.189355 7.072771 5.180284 5.18635 7.054819 0.0 0.0 0.109405