Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00155 ATGGGAAGAGGAAGAGTAGAACTGAAGCGGATAGAGAACAAGATCAACCGGCAAGTGACCTTCGCGAAACGAAGAAATGGTCTGTTGAAGAAAGCTTATGAGCTCTCCGTGCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACTCTTGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATGTATCCACTAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAGAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAGCTTGATATGTCACTCAAGCAGATCAGATCAACAAGGGTAGTTCTTCAACTTCTCCATTGCCTTTAA 462 45.24 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRVVLQLLHCL 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 946020 948551 + Carg05000-RA Car08g00155 152729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00155 153 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car08g00155 153 ProSiteProfiles K-box domain profile. 89 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g00155 153 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car08g00155 153 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car08g00155 153 Pfam K-box region 91 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00155 Car-Chr8:946020 Car14g01026 Car-Chr14:8791655 1.28E-78 dispersed
Car17g01325 Car-Chr17:9913236 Car08g00155 Car-Chr8:946020 8.49E-27 dispersed
Car08g00155 Car-Chr8:946020 Car08g00157 Car-Chr8:952881 5.82E-27 proximal
Car17g01324 Car-Chr17:9910000 Car08g00155 Car-Chr8:946020 4.09E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3933 PF01486 K-box 9.90E-18 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00155 - - csv:101216798 280.411