Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00162 ATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGCTGGCTGAAGCCTCCAGAGGTGTTCTTTATTTTACAGAATTATGAAAAATATCAGCTGACAGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAAAAAAGGGATGGAAGAACTGTTGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGTTGGATCCGTCATTTGACCACATTGTTCTGGTACACTATAGAGATATTAATGAGGGAAGGCCTGGGACGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTACTTTTGGTTCCCATTCATCTCAAAGTTTTGCTTTGGAACATCGACAGAGTTCATTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGCAACCGTACTGTTGGGTCAAATGGTGCGGATGGGCAGCATGAAATATCAGAATTAAAAAACGAATGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAACGAAGACAGCTTGAAAGACATTGATCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGACGATCAGTTTTCAGTGCTTCAGCATTCAGAAAATGCTATCCATGATAATAATTATACATCGTTTGAGATCCAAGATGCCAATGAAAAACATTCCGATTATGCTATGGCACACGAGATTATGTTTGATAGTGAAGGAACTCAACCATGGGGTTATGCACTTGTTTCACGTAAGACAGCTGATCTTGAATCTCAAGATAGACAGTCTCTCCTATGGAATGAAAATGAAAAATCATCATCATCTTTGAGTAAAAGTACAACTGTGGACAATGAACATTACAACTTGGTGCACAGAAGAGGAAAAACTTCTGCTTTGCTTGGAAGCTGCACATCTTCAGAATATACTTCACCACTAGACAATCATGATGTTAATTCCAACTACCATATACCATTTCTTACAGAAGACCATGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGTTCCACAAGTGCAGAAATTTATAATCCGCCAAATTGTTCCTGAGCAGGGTTATGCCACTGAGAATACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCTGAATCTCCTTGGGCTTGTATGTTCGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGACTCTTTATTGCGAAGCACCTCCACACCTTCCTGGGAAAGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATTCAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCATTGCTACTCACATTCTAGTGGAGCTACGAAGAGTCCAGAGGAGCTGTTGTTACTTGTCAGGCTTGTCCAATTACTGCTCTCTGACTCTAACACGGTAAATTCTGAAGTAAGGAGCAATTATGTGAAAGCTGGTGATGATCAGTGGAGTTCTTTGATAGAGGGTCTTCTAGTTGGTAGTGAAACTCCTTCTGATACCGTTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCATCTCTGGCTTGCTTCCCAACCGAAAGATAGACATGATCCGGCAGGATGTTCCTTGTCCAAGAAAGAACAGGGTATTATACACATGATTGCTGGCTTGGGCTATGTGTGGGCATTAAACCCAATTCTGAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTTCACTGGGCCGCACGATTTGGAAGGGAAAAAATGGTTGCTTCACTAATAGCCTCAGGAGCATCAGCTGGCTCTGTGACTGATCCTAGTGCACAAGATCCAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTACTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAAGGGTTCTGCTGAGGTAGAAGCAGAAATGACAGTAAATAGCATTTCAGAGGGGAACCACACTTCTACTGAGGACTATACCCCTCTAAGCGATACGTTAGCTGCAGTAAGGAACGCTGCACAGGCAGCAGCACGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGAGACAGCAGAAAGAGGCAGTTTTTGCAGCTTGCATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCAATGTCAAAGTTAAAGTTTTCTAATCGACGTGATTGCAACGCTGCTGCATTATCTATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTCAAGAGTTCTTATCGATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGTTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTCGGTTTGAGAGGTTTTCGTAGCGATATAGAGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTATTCCGCAAAGAAAAAGTGGAAGTTACTATCGATGAGGCTGTTTCACGAGTGCGATCGATGGTTAACTCTCTGGATGCTCGTCAGCAATATCATCGTACGCTTAAAGGATTTCGAGAAGCTAAGGCTGAGCTTAATGGTGCCGATCGTTAA 2805 41.35 MNAGYDINDLYREAQTRWLKPPEVFFILQNYEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSFDHIVLVHYRDINEGRPGTESVPQLSPASASTFGSHSSQSFALEHRQSSLSPGSVEVSSDTGNRTVGSNGADGQHEISELKNECEVSQALRRIEEQLSLNEDSLKDIDPFYGHEEGSNSNLIDYYEMSNDDQFSVLQHSENAIHDNNYTSFEIQDANEKHSDYAMAHEIMFDSEGTQPWGYALVSRKTADLESQDRQSLLWNENEKSSSSLSKSTTVDNEHYNLVHRRGKTSALLGSCTSSEYTSPLDNHDVNSNYHIPFLTEDHGNSFEVDTSLIVPQVQKFIIRQIVPEQGYATENTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGTLYCEAPPHLPGKVSFCITSGNREPCSEFREFEYKMNVCSHCYSHSSGATKSPEELLLLVRLVQLLLSDSNTVNSEVRSNYVKAGDDQWSSLIEGLLVGSETPSDTVDWLLQELLKDKLHLWLASQPKDRHDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGSVTDPSAQDPDGKTAASIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKGSAEVEAEMTVNSISEGNHTSTEDYTPLSDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAVFAACIDEYGIDPNDIQGLLAMSKLKFSNRRDCNAAALSIQKKYRGWKGRQEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSDIESIDENEDDDIIKVFRKEKVEVTIDEAVSRVRSMVNSLDARQQYHRTLKGFREAKAELNGADR 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 983394 996979 + Carg05007-RA Car08g00162 152736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00162 934 Pfam CG-1 domain 13 126 IPR005559 GO:0003677
Car08g00162 934 ProSiteProfiles IQ motif profile. 820 844 IPR000048 GO:0005515
Car08g00162 934 MobiDBLite consensus disorder prediction 132 190 - -
Car08g00162 934 MobiDBLite consensus disorder prediction 134 187 - -
Car08g00162 934 ProSiteProfiles Ankyrin repeat region circular profile. 622 648 - -
Car08g00162 934 Pfam IPT/TIG domain 399 472 IPR002909 -
Car08g00162 934 ProSiteProfiles IQ motif profile. 798 826 IPR000048 GO:0005515
Car08g00162 934 Pfam IQ calmodulin-binding motif 822 841 IPR000048 GO:0005515
Car08g00162 934 Pfam IQ calmodulin-binding motif 799 817 IPR000048 GO:0005515
Car08g00162 934 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677
Car08g00162 934 Pfam Ankyrin repeats (3 copies) 598 681 IPR002110 GO:0005515
Car08g00162 934 ProSiteProfiles Ankyrin repeat profile. 622 654 IPR002110 GO:0005515
Car08g00162 934 ProSiteProfiles IQ motif profile. 740 768 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00162 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 1499.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00162 Car-Chr8:983394 Car11g01186 Car-Chr11:9603351 6.63E-46 dispersed
Car17g01328 Car-Chr17:9946059 Car08g00162 Car-Chr8:983394 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g01186 . 1 1091 CAMTA Transcription Factor Family AT5G64220 53.1 5.5e-270 927.9
Car19g00205 . 28 1103 CAMTA Transcription Factor Family AT5G64220 52.5 2.0e-264 909.4
Car08g00162 . 5 929 CAMTA Transcription Factor Family AT1G67310 51.8 2.8e-250 862.4
Car17g01328 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.3 2.4e-246 849.4
Car08g01136 CST 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 2.2e-258 889.0
Car17g00331 CCT,CST 91 957 CAMTA Transcription Factor Family AT3G16940 53.8 9.7e-254 873.6
Car17g00331 CCT,CST 68 681 CAMTA Transcription Factor Family AT4G16150 52.4 4.5e-191 665.6
Car08g01136 CST 11 630 CAMTA Transcription Factor Family AT4G16150 52.1 3.2e-189 659.4
Car11g01186 . 1 1091 CAMTA Transcription Factor Family AT5G64220 53.1 5.5e-270 927.9
Car19g00205 . 28 1103 CAMTA Transcription Factor Family AT5G64220 52.5 2.0e-264 909.4
Car08g00162 . 5 929 CAMTA Transcription Factor Family AT1G67310 51.8 2.8e-250 862.4
Car17g01328 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.3 2.4e-246 849.4
Car17g00331 CCT,CST 68 681 CAMTA Transcription Factor Family AT4G16150 52.4 4.5e-191 665.6
Car08g01136 CST 11 630 CAMTA Transcription Factor Family AT4G16150 52.1 3.2e-189 659.4
Car08g01136 CST 34 906 CAMTA Transcription Factor Family AT3G16940 55.1 2.2e-258 889.0
Car17g00331 CCT,CST 91 957 CAMTA Transcription Factor Family AT3G16940 53.8 9.7e-254 873.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3935 PF03859 CG-1 3.50E-48 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g00162 Car_Chr08 FPKM 7.016052 8.898519 4.394791 5.505869 4.386551 3.027102 4.880117 14.820278 13.047278 14.300492