Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00162 ATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGCTGGCTGAAGCCTCCAGAGGTGTTCTTTATTTTACAGAATTATGAAAAATATCAGCTGACAGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCTTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAAAAAAGGGATGGAAGAACTGTTGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGTTGGATCCGTCATTTGACCACATTGTTCTGGTACACTATAGAGATATTAATGAGGGAAGGCCTGGGACGGAAAGTGTTCCACAATTATCTCCAGCATCGGCTTCTACTTTTGGTTCCCATTCATCTCAAAGTTTTGCTTTGGAACATCGACAGAGTTCATTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGCAACCGTACTGTTGGGTCAAATGGTGCGGATGGGCAGCATGAAATATCAGAATTAAAAAACGAATGTGAGGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAACGAAGACAGCTTGAAAGACATTGATCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGACGATCAGTTTTCAGTGCTTCAGCATTCAGAAAATGCTATCCATGATAATAATTATACATCGTTTGAGATCCAAGATGCCAATGAAAAACATTCCGATTATGCTATGGCACACGAGATTATGTTTGATAGTGAAGGAACTCAACCATGGGGTTATGCACTTGTTTCACGTAAGACAGCTGATCTTGAATCTCAAGATAGACAGTCTCTCCTATGGAATGAAAATGAAAAATCATCATCATCTTTGAGTAAAAGTACAACTGTGGACAATGAACATTACAACTTGGTGCACAGAAGAGGAAAAACTTCTGCTTTGCTTGGAAGCTGCACATCTTCAGAATATACTTCACCACTAGACAATCATGATGTTAATTCCAACTACCATATACCATTTCTTACAGAAGACCATGGAAATTCTTTTGAAGTTGATACCAGTTTAATTGTTCCACAAGTGCAGAAATTTATAATCCGCCAAATTGTTCCTGAGCAGGGTTATGCCACTGAGAATACCAAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCTGAATCTCCTTGGGCTTGTATGTTCGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGACTCTTTATTGCGAAGCACCTCCACACCTTCCTGGGAAAGTTTCTTTCTGCATTACATCTGGCAATCGGGAACCCTGCAGTGAATTCAGAGAGTTTGAATATAAAATGAATGTTTGCAGTCATTGCTACTCACATTCTAGTGGAGCTACGAAGAGTCCAGAGGAGCTGTTGTTACTTGTCAGGCTTGTCCAATTACTGCTCTCTGACTCTAACACGGTAAATTCTGAAGTAAGGAGCAATTATGTGAAAGCTGGTGATGATCAGTGGAGTTCTTTGATAGAGGGTCTTCTAGTTGGTAGTGAAACTCCTTCTGATACCGTTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCATCTCTGGCTTGCTTCCCAACCGAAAGATAGACATGATCCGGCAGGATGTTCCTTGTCCAAGAAAGAACAGGGTATTATACACATGATTGCTGGCTTGGGCTATGTGTGGGCATTAAACCCAATTCTGAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTTCACTGGGCCGCACGATTTGGAAGGGAAAAAATGGTTGCTTCACTAATAGCCTCAGGAGCATCAGCTGGCTCTGTGACTGATCCTAGTGCACAAGATCCAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTACTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAAGGGTTCTGCTGAGGTAGAAGCAGAAATGACAGTAAATAGCATTTCAGAGGGGAACCACACTTCTACTGAGGACTATACCCCTCTAAGCGATACGTTAGCTGCAGTAAGGAACGCTGCACAGGCAGCAGCACGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGAGACAGCAGAAAGAGGCAGTTTTTGCAGCTTGCATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCAATGTCAAAGTTAAAGTTTTCTAATCGACGTGATTGCAACGCTGCTGCATTATCTATACAAAAAAAGTATAGAGGTTGGAAAGGTCGTCAAGAGTTCTTATCGATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGTTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTCGGTTTGAGAGGTTTTCGTAGCGATATAGAGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTATTCCGCAAAGAAAAAGTGGAAGTTACTATCGATGAGGCTGTTTCACGAGTGCGATCGATGGTTAACTCTCTGGATGCTCGTCAGCAATATCATCGTACGCTTAAAGGATTTCGAGAAGCTAAGGCTGAGCTTAATGGTGCCGATCGTTAA 2805 41.35 MNAGYDINDLYREAQTRWLKPPEVFFILQNYEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDPSFDHIVLVHYRDINEGRPGTESVPQLSPASASTFGSHSSQSFALEHRQSSLSPGSVEVSSDTGNRTVGSNGADGQHEISELKNECEVSQALRRIEEQLSLNEDSLKDIDPFYGHEEGSNSNLIDYYEMSNDDQFSVLQHSENAIHDNNYTSFEIQDANEKHSDYAMAHEIMFDSEGTQPWGYALVSRKTADLESQDRQSLLWNENEKSSSSLSKSTTVDNEHYNLVHRRGKTSALLGSCTSSEYTSPLDNHDVNSNYHIPFLTEDHGNSFEVDTSLIVPQVQKFIIRQIVPEQGYATENTKVIIIGSFLCDPSESPWACMFGDIEVPLQIVQNGTLYCEAPPHLPGKVSFCITSGNREPCSEFREFEYKMNVCSHCYSHSSGATKSPEELLLLVRLVQLLLSDSNTVNSEVRSNYVKAGDDQWSSLIEGLLVGSETPSDTVDWLLQELLKDKLHLWLASQPKDRHDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGSVTDPSAQDPDGKTAASIADIHGHKGLAGYLSEVALTTHLSSLTFEEGELSKGSAEVEAEMTVNSISEGNHTSTEDYTPLSDTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAVFAACIDEYGIDPNDIQGLLAMSKLKFSNRRDCNAAALSIQKKYRGWKGRQEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSDIESIDENEDDDIIKVFRKEKVEVTIDEAVSRVRSMVNSLDARQQYHRTLKGFREAKAELNGADR 934
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 983394 996979 + Carg05007-RA Car08g00162 152736
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car08g00162 934 Pfam CG-1 domain 13 126 IPR005559 GO:0003677
Car08g00162 934 ProSiteProfiles IQ motif profile. 820 844 IPR000048 GO:0005515
Car08g00162 934 MobiDBLite consensus disorder prediction 132 190 - -
Car08g00162 934 MobiDBLite consensus disorder prediction 134 187 - -
Car08g00162 934 ProSiteProfiles Ankyrin repeat region circular profile. 622 648 - -
Car08g00162 934 Pfam IPT/TIG domain 399 472 IPR002909 -
Car08g00162 934 ProSiteProfiles IQ motif profile. 798 826 IPR000048 GO:0005515
Car08g00162 934 Pfam IQ calmodulin-binding motif 822 841 IPR000048 GO:0005515
Car08g00162 934 Pfam IQ calmodulin-binding motif 799 817 IPR000048 GO:0005515
Car08g00162 934 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677
Car08g00162 934 Pfam Ankyrin repeats (3 copies) 598 681 IPR002110 GO:0005515
Car08g00162 934 ProSiteProfiles Ankyrin repeat profile. 622 654 IPR002110 GO:0005515
Car08g00162 934 ProSiteProfiles IQ motif profile. 740 768 IPR000048 GO:0005515
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00162 Car-Chr8:983394 Car11g01186 Car-Chr11:9603351 6.63E-46 dispersed
Car17g01328 Car-Chr17:9946059 Car08g00162 Car-Chr8:983394 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3935 PF03859 CG-1 3.50E-48 No_clan Car TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00162 K21596 - csv:101222798 1499.57