Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00164 ATGAACTGGTTCATTAATGAAGTCATGGAAGCCAAGGGTGGTTTGGTATGGGCCCAGTTTTGGGAGAAGCTCATTGGAAAGTGCTGCAAGATGCATCACCAGTACTATCAGTATATTGGATCCAAGAAGGCCAGAAACACTTGGTGGAGAAGGGTTTTGGTGGCCTGGGTTCTTTGTTCTGTGTTTGGTTCTTTGTGGATCTTCCATTACATGAGCTCTCAAGCTACAGAGAAGAGGAAAGAGGGGTTGGGAAGCATGTGTGATGAGCGGGCTAGGATGCTTCAAGATCAGTTCAATGTCAGTATGAACCATATCCAAGCAATGTCCATACTCATCTCCACCTTCCATCATGCCAAGAACCCTTCTGCTATAGATCAGAGGACATTTGCGAGGTACACGGAACGAACTGCGTTCGAGAGGCCTCTTACGAGTGGTGTGGCGTATGCGGTAAGGGTGCTCCATTCGGAACGAGAGCGTTTCGAGAAGCAGCAGGGGTGGACAATTAAAAGGATGGATAAAATTGAACAAAGTCCGGTTCATGAAGATGAGTATGCTCCAGAAGACCTGGAGCCATCGGCGACCGAAGACGAATATGCTCCCGTTATCTTCGCACAGGATACGATTTGTCATGTGGTTTCTCTTGATATGCTGTCGGGAAAGGAAGACAGGAAGAACGTTTTACGAGCTAGAGCATCGGGAAAGGGAGTGTTAACAGCTCCATTCAAATTGATCAAAACAAATCGGCTGGGAGTCATACTTACGTTTGCTGTGTACAAGAGAGATCTTCCCTCGAATGCCACTCCAAACGAGAGGATTCAAGCTACAGATGGATATCTTGGGGGAGTTTTTGATATCGAGTCGCTCGTGGAGAAGCTACTTCAACAGCTTGCAAGCAACCAAACCATCCTAGTGAATGTTTATGATACTACGAACCAATCACACCCGATCAGTATGTACGGTAAAGACGTATCAGAAGACGGGTTGCAGCATGTTAGCCCGCTTAACTTTGGGGATCCAGATAGGAAGCACGAGATGCGATGCAGATTCAAACAAAAACAACCATGGCCATGGTTAGCAATATCAACTTCAATTGGCATACTCATTATTGCATTGCTTTTGGGGTATATATTTCACGCAACCTTGAACCGTATCACGAAAGTGGAGGACGATTATCACGAGATGATGGAACTCAAGAAACGGGCAGAAGCTGCTGATGTTGCGAAATCTCAGTTCCTTGCAACCGTGTCTCATGAGATCAGATCCCCAATGAACGGCGTTCTAGGGATGTTGGATTTGCTTATGGACACAGGCCTGGATTTCACTCAACAAGATTTTGTTAGAAGTGTACAAGATAGTGGAAAAGCTTTGGTGTCATTGGTAAATGAGGTTTTGGATCAAGCAAAGATTGAATCTGGAAAGCTTGAGCTTGAAGCCATTCCATTCAATCTGCAAGCAATTTTGGATGATATTTTGTCACTTTTTTCTGGGAAATCTCAAGAAAAGGGATTGGAGCTCGCAGTTTACATCTCGGACAGCGTCCCCGAGATGCTTGTCGGTGATCCGGGAAGGTTTAGGCAAATCATCACGAATCTCGTGGGGAACTCGATCAAGTTCACAGAGCAAGGACATATATTTATCACAGTTAATGTCGTTGAGGAGGTTCTTGAGTCGATTGATCTCGAGATCGAGTCATCAACGAATAGCACGTTGAGTGGCTATCCGGTTGCCAATAGGCGTCTCAGCTGGGCTGGATTTCAAACATTGAGTCAAGACGGACCGACGGCTTGTCATTTCCCGCCATTGTCACCAGACCATATTAACCTCATGGTATCCGTGGAAGATACAGGCGTTGGCATTCCCCTAGAAGCGCAATCACGTGTTTTCACTCCCTTCATGCAGGTTCGACCGTCGACATCTAGAACGCACGGAGGAACGGGTATCGGGCTGAGTATTAGCAAATGTTTGGTTGGTCTGATGAAGGGGGAGATTGGTTTTGCAAGTGTACCTACGATTGGCTCGACCTTCACATTTACTGCGGTTTTCTCGAACGAGCCAAGTGAGTATGACAAATCCCAGCAAATTAAGAACACTTCCATCTCAGCGTCCTCGGCATTTAAGGGCATGAGGGCATTAGTCGTGGACCATCGACCGATTCGGGCCAAAGTATCGAGATATCATATTCAACGTCTTGGAATAAACGTCGAGTTATTACCTGACTTGAACCAATGTGTGCATACCACCATGATTGGTGGTTCAGCTATCAATATGATCTTTGTTGAGCAAGATCTTTGGGATAAGGATATGAGCATATCAGATGTTCTTATCCACAACTTGAGAAATTCAAATGGGGTTCCTCCCAAACTGTTTCTTCTTACTAACTCCAGCGATATAATTTCTGATGTACTAACTCCCATACTCATCTTAAAGCCCTTGAGGGCAGGCATGCTTGCTGCCTCTCTACACCGGTTCATGGGCGTCGGAATTAATCGCAATCGCAACGGAGAGCTTCCTGTACACTCTCTCCGTCATCTACTTCTCGGTCGGAAAATTCTTATCATAGATGACAATAAGGTTAACCGTATCGTTGCTGCTGGTGCTCTAAAACGGTATGGAGCTGATGTCGTATGCAAAAACAGTGGAATAGATGCGATCCGATTGCTTACGCCACCCCATCGATTCGATGCTTGTTTCATGGATATTCAGATGCCAGAAATGGATGGCTTTGAAGCTACACGAAGAATTCGGGAAATCGAATGTCGTATCAACGACAGTATCGAAGTTGGAGAACAATCAAAAGAAGCATATGAAAATAAATGTAATTGGCACGTACCCATCTTCGCCATGACTGCAGACGTAATCCAGGCGACACATGAGAAATGTCTTCGGTGTGGGATGGATGGATACGTTACGAAGCCATTTGAAATCGATCGACTTTACCGAGAGGTTTCTCAGTTTTTCCACAGTACCTCAAATGGAACTTTATAG 2985 45.36 MNWFINEVMEAKGGLVWAQFWEKLIGKCCKMHHQYYQYIGSKKARNTWWRRVLVAWVLCSVFGSLWIFHYMSSQATEKRKEGLGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSERERFEKQQGWTIKRMDKIEQSPVHEDEYAPEDLEPSATEDEYAPVIFAQDTICHVVSLDMLSGKEDRKNVLRARASGKGVLTAPFKLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGLQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAISTSIGILIIALLLGYIFHATLNRITKVEDDYHEMMELKKRAEAADVAKSQFLATVSHEIRSPMNGVLGMLDLLMDTGLDFTQQDFVRSVQDSGKALVSLVNEVLDQAKIESGKLELEAIPFNLQAILDDILSLFSGKSQEKGLELAVYISDSVPEMLVGDPGRFRQIITNLVGNSIKFTEQGHIFITVNVVEEVLESIDLEIESSTNSTLSGYPVANRRLSWAGFQTLSQDGPTACHFPPLSPDHINLMVSVEDTGVGIPLEAQSRVFTPFMQVRPSTSRTHGGTGIGLSISKCLVGLMKGEIGFASVPTIGSTFTFTAVFSNEPSEYDKSQQIKNTSISASSAFKGMRALVVDHRPIRAKVSRYHIQRLGINVELLPDLNQCVHTTMIGGSAINMIFVEQDLWDKDMSISDVLIHNLRNSNGVPPKLFLLTNSSDIISDVLTPILILKPLRAGMLAASLHRFMGVGINRNRNGELPVHSLRHLLLGRKILIIDDNKVNRIVAAGALKRYGADVVCKNSGIDAIRLLTPPHRFDACFMDIQMPEMDGFEATRRIREIECRINDSIEVGEQSKEAYENKCNWHVPIFAMTADVIQATHEKCLRCGMDGYVTKPFEIDRLYREVSQFFHSTSNGTL 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 999747 1004737 - Carg05009-RA Car08g00164 152738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00164 994 ProSiteProfiles Response regulatory domain profile. 849 986 IPR001789 GO:0000160
Car08g00164 994 ProSiteProfiles Histidine kinase domain profile. 414 683 IPR005467 -
Car08g00164 994 Pfam Response regulator receiver domain 850 981 IPR001789 GO:0000160
Car08g00164 994 Pfam CHASE domain 123 319 IPR006189 -
Car08g00164 994 ProSiteProfiles CHASE domain profile. 120 346 IPR006189 -
Car08g00164 994 Pfam His Kinase A (phospho-acceptor) domain 407 472 IPR003661 GO:0000155|GO:0007165
Car08g00164 994 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 519 681 IPR003594 -
Car08g00164 994 Coils Coil 384 404 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02077 Car-Chr4:16922796 Car08g00164 Car-Chr8:999747 0 dispersed
Car08g00164 Car-Chr8:999747 Car11g01462 Car-Chr11:11820524 0 dispersed
Car17g01014 Car-Chr17:8050732 Car08g00164 Car-Chr8:999747 8.42E-34 dispersed
Car17g01329 Car-Chr17:9961941 Car08g00164 Car-Chr8:999747 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3936 PF03924 CHASE 1.20E-37 CL0165 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00164 K14489 - csv:101216313 1691.4