Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00174 ATGCAAAGCTCCACCAGCCAGTCGTCGGAGTACTCACTCGACCGCTCTCCGCCCACCGCTGCTGGAAAATGGGCCTCCACCCTTCTCAAAGAGTGCGCTCGAGCTATCTCCGACAAAGACTCCAACAAAATCCACCATCTTCTTTGGATGTTGAACGAGCTCGCCTCCCCGTACGGCGACTCCGATCAGAAATTGGCTTATTACTTCTTGCAAGCTCTCTTTTGCAGAGCTACCGAAACCGGCCTCACTTGCTACAAAACCCTCGTCACCGTTTCCGAGAAGAATTACTCCTTCGACTCCGCTCTCAAGCTCATCCTCAAGTTTCAAGAGGCAAGTCCATGGATGACGTTTGGGCACGTGGCATCGAACGGGGCAATTCTCGAGGCTCTCGAGCGAGAAACGAAGCTACATATCATCGACATAAGCGACACCCTTTGCACCCAATGGCCAACCCTATTAGAATCGCTAGCTACACGCAATGATGACACTCCACATCTCAAGCTCACGGTGGTATCAACAACAACAAAGGTGAAGTGTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCTTTCGAGTTCAATCCCATAACGAATCTTAACCAATTAAGCGACCTCGAGAACGAAGCTCTCAAAGTAGAAGAAGACGAAGCCATCGCTATAAATTGCAATGGAGGTTTAAGAACAGTAAAAATCGAGGAGAGAAACGCTGTGATTTCAATGTTGAAATCGTTAAAGCCTCGAGTTTTGACAATGGTTGAAGAAGAAGCTGATTTCATAAGCTCGAAAAATGAGTTCTTGAGCTGTTTTGATGAGTGTCTTAGATTTTACACGCTCTACTTCGAGATGTTAGAAGAGAGCTTTGAAGCAACGAGCAATGAGAAATTGGGTTTGGAAAGAGAGTGTTCGAGAAACATTGTGAGGCTCTTGGGGTGTGGTAATGAAAGCGAACTCGAACGTGAGTTAACGAGCGAGAGAAGAGAAAAGGGAAAGCAATGGAGCGAAAGGCTTGAAGAACGAGGTTTTTTATCGGCTCGATTCAGTGACGATGTGATGGACGACGTTAAGGCTTTGCTCAAAAGGTACAAACCCGGTTGGGCGTTGATGCATCGGACCGGTGCTATCGACACGAACCGAGACGAAGAAGAAGGTGGTGATGATTCGAGTGGAATTTATTTGACATGGAAGGAAGAACCAATGGTGTGGATTTCAGCATGGAAACCCTAG 1248 46.88 MQSSTSQSSEYSLDRSPPTAAGKWASTLLKECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCRATETGLTCYKTLVTVSEKNYSFDSALKLILKFQEASPWMTFGHVASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKCLMKEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGGLRTVKIEERNAVISMLKSLKPRVLTMVEEEADFISSKNEFLSCFDECLRFYTLYFEMLEESFEATSNEKLGLERECSRNIVRLLGCGNESELERELTSERREKGKQWSERLEERGFLSARFSDDVMDDVKALLKRYKPGWALMHRTGAIDTNRDEEEGGDDSSGIYLTWKEEPMVWISAWKP 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1056709 1058174 + Carg05019-RA Car08g00174 152748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00174 415 Pfam GRAS domain family 27 414 IPR005202 -
Car08g00174 415 MobiDBLite consensus disorder prediction 1 20 - -
Car08g00174 415 MobiDBLite consensus disorder prediction 1 15 - -
Car08g00174 415 ProSiteProfiles GRAS family profile. 16 414 IPR005202 -
Car08g00174 415 Coils Coil 288 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00831 Car-Chr3:6753922 Car08g00174 Car-Chr8:1056709 1.25E-151 dispersed
Car07g00575 Car-Chr7:2915594 Car08g00174 Car-Chr8:1056709 1.83E-149 dispersed
Car08g00174 Car-Chr8:1056709 Car19g00735 Car-Chr19:8286139 6.06E-61 dispersed
Car17g00580 Car-Chr17:5526389 Car08g00174 Car-Chr8:1056709 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3937 PF03514 GRAS 1.40E-93 CL0063 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00174 - - csv:101206730 669.463