Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00177 ATGAAAATTCAGTGCGATGTTTGTGAGAAAGCTCCTGCTACTTTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAGTGCGATGTTGAAGTTCATGCTGCTAATAAGCTTGCGAGCAAACACCAGAGGCTTCTTCTTCAGTGCCTCTCTACTAAGCTTCCCAAATGCGATATATGCCAAGACAAGCCGGCTTTCATTTTCTGCGTTGAAGACAGAGCACTTTTTTGTCAAGATTGTGATGAACCAATTCATTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTTCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCACGAAGGACGTCGACAAGGTCAAAATGGAACCTCCAAATCCGAAGAACCCTCAGGTTCCTGCTAAAATGCCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCGGTTGACGACTTTCTCCACTTCTCCGATCTCGAGTCCTCTGACAAGCAGAAAGAAGATCTAGAGTTCGGAGAACTAGAATGGCTAGCAGAAATGGGGCTGTTTGGGGAGCAAGTTCCTCAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTAGTGCATTCGCATACAGGCCGACGAAGTCGAGCATGTCGTACAAAAAGCCTAGGATCGAGGTGGTAGACGAGGATGAGTTTTTTACCGTTCCCGATCTCGGATGA 714 47.34 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKPAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCTKDVDKVKMEPPNPKNPQVPAKMPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEDLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSHSGSAFAYRPTKSSMSYKKPRIEVVDEDEFFTVPDLG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1086956 1089889 + Carg05023-RA Car08g00177 152751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00177 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Car08g00177 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Car08g00177 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car08g00177 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00177 Car17g00573 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00611 Car-Chr4:3501007 Car08g00177 Car-Chr8:1086956 4.77E-44 dispersed
Car08g00177 Car-Chr8:1086956 Car16g00390 Car-Chr16:2396513 5.96E-09 dispersed
Car17g00573 Car-Chr17:5416293 Car08g00177 Car-Chr8:1086956 2.18E-118 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3938 PF00643 zf-B_box 1.50E-08 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00177 - - csv:101215327 444.891