Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00178 ATGGCTCCAAATAACGGCGCTTCTCCCACCGGCTCCGGTCTGATCGTTAGTTTCGGTGAGATGTTGATCGATTTCGTCCCGACGGTTTCCGGCGTATCTCTAGCGGATGCGCCTGGATTTCTCAAGGCTCCCGGCGGTGCTCCGGCGAATGTTGCGATCGCTGTCAGTCGCCTTGGCGGTCGCTCTGCCTTCGTTGGAAAGCTCGGCGAAGATGAGTTTGGCCATATGTTGGCCAATATCTTGAGGGAGCACGGCGTTAACGACGAAGGAATCTGCTTCGATAAAGGCGCTAGAACCGCCTTAGCCTTCGTCACTCTGCGTTCCGACGGTGAGCGTGAGTTTATGTTCTACCGAAACCCTAGCGCCGATATGCTTCTCAAGGCGGACGAATTGAATATCAAACTCATCAAATCCGCTAAAATCTTTCACTATGGGTCCATAAGCTTGATCGTGGAGCCCTGCAGATCTGCCCATATAAAGGCAATGGAGGAGGCCAAGAAAGCAGGTGCTCTGCTTTCATACGATCCAAATCTGAGGCTGCCTCTGTGGCCTTCAGCAGATGAGGCCCGTGAACAGATCAAAAGCATTTGGGACAAGGCCGACATCATCAAGGTTAGCGATGATGAGCTCAAATTCCTCACCAAATCCGAAAAGGTCGATGATGAAACCGCCATGTCTCTCTGGCATGATGGCTTGAAGCTCCTCTTGCTCACTCTCGGTGAGCATGGCTGCAAATACTACACCAAGAACTTCCGCGGCTCCGTGGATCCATTCAAGGTCAAAACTGTGGACACAACTGGAGCTGGCGACTCGTTTGTTGGCGCTCTCCTTTGCAAGATTGTCGACGACCAATCCGTTCTCGAGGATGAGAAGAGGGTGAGGGAGATCTTGAGATTTGCAAATGCATGTGGAGCCATTACAACAACCAAGAAGGGAGCAATCCCAGCTCTCCCATCAGAGGCTGACGTGGAAGCCTTGATCAAGGCTTCTACCTAG 996 52.11 MAPNNGASPTGSGLIVSFGEMLIDFVPTVSGVSLADAPGFLKAPGGAPANVAIAVSRLGGRSAFVGKLGEDEFGHMLANILREHGVNDEGICFDKGARTALAFVTLRSDGEREFMFYRNPSADMLLKADELNIKLIKSAKIFHYGSISLIVEPCRSAHIKAMEEAKKAGALLSYDPNLRLPLWPSADEAREQIKSIWDKADIIKVSDDELKFLTKSEKVDDETAMSLWHDGLKLLLLTLGEHGCKYYTKNFRGSVDPFKVKTVDTTGAGDSFVGALLCKIVDDQSVLEDEKRVREILRFANACGAITTTKKGAIPALPSEADVEALIKAST 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1098345 1101804 - Carg05024-RA Car08g00178 152752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00178 331 PRINTS Ribokinase signature 40 59 IPR002139 GO:0016301
Car08g00178 331 PRINTS Ribokinase signature 195 210 IPR002139 GO:0016301
Car08g00178 331 PRINTS Ribokinase signature 235 246 IPR002139 GO:0016301
Car08g00178 331 PANTHER BNAA04G18320D PROTEIN 20 324 - -
Car08g00178 331 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 45 69 IPR002173 GO:0016773
Car08g00178 331 SUPERFAMILY Ribokinase-like 15 327 IPR029056 -
Car08g00178 331 Gene3D - 13 331 IPR029056 -
Car08g00178 331 PANTHER HEXOKINASE FAMILY MEMBER 20 324 - -
Car08g00178 331 Pfam pfkB family carbohydrate kinase 14 319 IPR011611 -
Car08g00178 331 CDD bac_FRK 14 314 - -
Car08g00178 331 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 264 277 IPR002173 GO:0016773
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00178 K00847 E2.7.1.4, scrK; fructokinase [EC:2.7.1.4] - csv:101213366 552.362
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g00178 Car17g00570 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00768 Car-Chr2:5610830 Car08g00178 Car-Chr8:1098345 1.65E-138 dispersed
Car08g00178 Car-Chr8:1098345 Car14g00774 Car-Chr14:4472335 1.15E-139 dispersed
Car17g00570 Car-Chr17:5324122 Car08g00178 Car-Chr8:1098345 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1238 Blo01g00197 Blo12g00260 Bda03g00976 . Bpe04g00903 . . . Cmo08g00204 Cmo17g00583 . . . . . . . . . . . . . . Cla06g00083 Cam06g0141 Cec06g0090 Cco06g0087 Clacu06g0090 Cmu06g0088 Cre06g0861 . . . . . . . . . . . . Bpe05g00976 . . . Sed09g0418 . . . Cma17g00603 Car08g00178 Car17g00570 Cpe12g00513 Cpe17g01091 Bhi12g02522 Tan06g1586 Cmetu11g0190 . Hepe03g1051 . . . . . . . . . . . . Cme11g02461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004086 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 2 4 1 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g00178 Car_Chr08 FPKM 5.680957 8.408446 19.740673 23.096037 3.109569 4.15219 3.327122 25.14992 26.851387 28.993776