Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00179 ATGGTTGATAGTTTATGTATGCTTAATGTGATTTTTGCATGTCGACCTCATCATGAAGTCCTTATACTTGCACAGGATTCTATTATTGTAGACCATGCTGCTGAAGATGATGACCATGGATCTGAAAGTGAGCCTTCAGAGTGGTCCTTTGCTTCCATGAGTAAGGAACAAGAGTCCCAAACTACTGATAGGGATATAATGATGGTTCATCTGCTCCATCTTGCATGTGCCCCTAAAGGACCATTGGCTGATGCTCTGCCAAAATTGGCGTCTGAACTTTACAACTCAGGGATCCTGTCAAAAGTGGCTCTGGATTTAGCCTCTAAACCGTCTTCCATGTTCCATAAAAAATTTGAGTCTGCTTTCCAGGAAGAGATGAATGCTACTAGTTTCTCCGAGTTTTGGAATCCCTCTGATTTTGGTGGGCCAACATCTTCTCAACTGAGTTCTCGATATCTTAATGATTTTGAGGAGCTAAAGCCCCTTGGTCATGGTGGTTTTGGACATGTAGTATTATGCAAAAACAAACTAGATGGACGACAATATGCTGTGAAAAAAATTCGCCTCAAGGACAAAATATTGCCTGCGTGGTCTGAAGCTGGTGTTTCTGATTCCTATGGAGAGGCCGCTTGGGGTTCCACGACTCCTTTGAGTTCTACTTTCAGCTATAAAGGTGCAAGTGCAACAGATACACTGGATCATGAGAATAAGCTGGAATCAACATATCTCTATATCCAAATGGAATATTGTCCCAGGACTCTTCGTCAGGATTTTGAATCATATACACATTTTGATAAAGAATTGGCATGGCATTTATTCCATCAAATAGTGGAAGGTCTGGCACATATACATGGACAAGGGATCATTCATCGGGATTTAACTCCAAGTAACATTTTCTTTGATGCCCGTAATGATATCAAAATCGGGGATTTTGGTCTTGCTAAGTTCTTAAAGCTGGAGCAATTAGATCAGGATGTAGGCGTTCCTCTAGATACAACTGGAGTTTCAATTGATGGTACTGGTCAAGTTGGGACCTACTTTTACACAGCACCTGAAATTGAACAAGGATGGCCAAAGATTGATGAAAAAGCTGATATGTACAGCTTAGGGATTGTGTTTTTTGAACTCTGGCACCCTTTTGGTACTGCGATGGAGAGGCACCTTGTTCTATCTGATTTGAAGCAGAAAGGAGAGCTTCCAACCACTTGGGTTGCTGAATTTCCTGAACAAGCATCCTTGTTACGATGTTTAATGTCGCAGAGTCCATCTGAGCGTCCTTCAGCCTTGGAACTCCTCCAGCATGCCTTTCCTCCAAGAATGGAGTATCAGTTGTTGGACAATATTCTACGAACAATGAAAACATCTGAGGACTCGAGTATATATGATAGAGTTGTTAATGCTATCTTCAGTGAAGAGACATTAGCGATAAAAGATGACCAACTTGATTGTGGTACTGCCTCTATCCAGTACACAGATTTGGGCACTGAGGTTCGGGATCATGTTATTGACGTCACAAGGGAGTTGTTCAGGCTGCATTGTGCAAAGCATTTGGAAATAAGTCCCATGCATTTGTTAGATGGGTCTGCGCAAATCAATAGGAACACGGTCAAACTTTTGAGCCATGGTGGAGATATACTTGAGCTCTGTCATGAGCTGCGTTTACCTTTTCTTAATTGGCTCGTCTCCAGTCAGAAATCTTCATTTAAACGGTATGATATAGCGTGTGTCTATCGAAGAGCAATTGGACATTCACCTCCAAATCGATACCTTCAGGGTGATTTTGATATCATTGGAGGTACATCGGCTTTGACTGAGGCAGAGGTTATCAAGGTGACTGTAGACGTTATTTCATATTTTTTTCATTCAGAATCTTGTGACATACACTTAAATCATGGAGATCTGTTGAATGCTATTTGGTCTTGGGTTGGTGTTAAGGCAGAACAAAGACATAAAGTGGCGGAGCTTCTCTCTATGATGGTATCCTTACGTCCTCAGTCTTCTGAGAGGAAATCAAAATGGGTTGTGATAAGGCGCCAACTGTTGCAGGAACTCAAATTAGCACAAGCTGTTGTAAATAGATTGCAGACTGTAGTTTTTAGGTTCTGTGGTGCAGTGGATCAGGCAGTTCCTAGATTGAGGGGAGCACTTCCAACAGACAAACCAATGCGTAGAGCACTTGTTGAGTTGTTAGACCTTTTCAACTACTTGAAAGTGTGGAGGCTTGAAGCAAATGTTTACATAGATGCCTTAATGTCACCAACGGAGGATTACCATCGAGATATTTTTTTTCAGGTATACTTAACAAAGGAAAATCATCCTGGTTCACATCCTGAAGGTACACTGGTTGCTATTGGTGGCCGCTATGACTATTTGCTGCAGCAAATGTGGAGCCGAGCATATAAAACTACCCCTCCGGGTGGCGTCGGGACCAGCATTGCATTAGAGACTATGATTCAGCAAGCTGCTTTAGATTTGAAACCCATCCGAAATGAGGGGAGCACCAGTTTCCTGGTTTGTTCGCGAGGAGGAGGTGGATTATTGTTAGAACGCATGGAGCTTGTTGTGGAGCTATGGGAGGAGAAGATTAAGGCTCAGCTTGTCCCTACACCTGATCCAAGCTTCACGGAGCAATATGAATATGCTAACGAGCATGACATAAAATGTCTTGTTATTATCACAGACTGTGGTGTATCAAATAAGGGTTCAGTAAGGGTTCGACATCTAGAACTCAAAAGGGAGAAAGAAGTTGAACGCACATCCATTGTCAAGTTTCTCCAGGAGGCAATGGCAAATCAATTAGTAGTTTGTATCGAGTTGAATATCTAA 2826 42.14 MVDSLCMLNVIFACRPHHEVLILAQDSIIVDHAAEDDDHGSESEPSEWSFASMSKEQESQTTDRDIMMVHLLHLACAPKGPLADALPKLASELYNSGILSKVALDLASKPSSMFHKKFESAFQEEMNATSFSEFWNPSDFGGPTSSQLSSRYLNDFEELKPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKILPAWSEAGVSDSYGEAAWGSTTPLSSTFSYKGASATDTLDHENKLESTYLYIQMEYCPRTLRQDFESYTHFDKELAWHLFHQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDVGVPLDTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFGTAMERHLVLSDLKQKGELPTTWVAEFPEQASLLRCLMSQSPSERPSALELLQHAFPPRMEYQLLDNILRTMKTSEDSSIYDRVVNAIFSEETLAIKDDQLDCGTASIQYTDLGTEVRDHVIDVTRELFRLHCAKHLEISPMHLLDGSAQINRNTVKLLSHGGDILELCHELRLPFLNWLVSSQKSSFKRYDIACVYRRAIGHSPPNRYLQGDFDIIGGTSALTEAEVIKVTVDVISYFFHSESCDIHLNHGDLLNAIWSWVGVKAEQRHKVAELLSMMVSLRPQSSERKSKWVVIRRQLLQELKLAQAVVNRLQTVVFRFCGAVDQAVPRLRGALPTDKPMRRALVELLDLFNYLKVWRLEANVYIDALMSPTEDYHRDIFFQVYLTKENHPGSHPEGTLVAIGGRYDYLLQQMWSRAYKTTPPGGVGTSIALETMIQQAALDLKPIRNEGSTSFLVCSRGGGGLLLERMELVVELWEEKIKAQLVPTPDPSFTEQYEYANEHDIKCLVIITDCGVSNKGSVRVRHLELKREKEVERTSIVKFLQEAMANQLVVCIELNI 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1103143 1117518 - Carg05025-RA Car08g00179 152753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00179 941 Pfam Histidyl-tRNA synthetase 581 815 IPR041715 -
Car08g00179 941 Pfam Protein kinase domain 156 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00179 941 ProSitePatterns Tyrosine protein kinases specific active-site signature. 288 300 IPR008266 GO:0004672|GO:0006468
Car08g00179 941 Pfam Anticodon binding domain of tRNAs 837 932 IPR024435 -
Car08g00179 941 ProSitePatterns Protein kinases ATP-binding region signature. 162 186 IPR017441 GO:0005524
Car08g00179 941 Coils Coil 677 697 - -
Car08g00179 941 MobiDBLite consensus disorder prediction 35 56 - -
Car08g00179 941 ProSiteProfiles Protein kinase domain profile. 156 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00179 K16196 EIF2AK4; eukaryotic translation initiation factor 2-alpha kinase 4 [EC:2.7.11.1] - csv:101207000 1632.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02910 Car-Chr4:21887441 Car08g00179 Car-Chr8:1103143 1.25E-15 dispersed
Car08g00179 Car-Chr8:1103143 Car03g00084 Car-Chr3:1065780 2.56E-20 dispersed
Car08g00179 Car-Chr8:1103143 Car02g01094 Car-Chr2:7597300 8.59E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1210 Blo01g00199 . . Bda08g00153 . . . Bma05g01170 Cmo08g00205 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0565 . . . . . . . . . . . . . . . . . . . . Car08g00179 . . Cpe17g01092 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006684 2 4 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 2 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89036 PF00069 Pkinase 7.10E-41 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g00179 Car_Chr08 FPKM 28.593254 30.093483 32.170624 30.579435 17.606197 19.800678 17.211058 38.710972 34.453697 35.301514