Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00187 ATGGATTCTGAGGACGATCTCCATTACTCCACCGATGATGATTGCGATTTCTACAGCGGCGATATGGACATGGGGATGGCCTATTACAGCGATGAAGACGATCCTGAAGCTGAGGACTTTGTTGATGACGATACCGATGATTACTTCGAGTCCCGTCGTCGCGAGCAAAATTTTACCATACTAAATGAATTTGATATAAGACAACGCCAAGAGGATGACATTACGAGAATTTCTTCTGTACTTTCTATATCACGTGTGGCTTCAATTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTTCATGATGAATGGTTTGCTGATGAAACTCGAGTACGGAAGCTAGTTGGCTTGTTGGAAGAACCTGTTGTACATGCCTCAAATGCTAGAGAACATACATGTGGAATCTGTTTTGAGTCCCATCCTGCAAGTAGGATCAAGTCTGCCGCCTGTGGTCATCCTTTCTGCGCCTCCTGCTGGGAAGGCTACATTAGCACATCAATTAATGATGGTCCTGGATGTCTGATGTTGAGATGTCCTGTACCTTCTTGCGGTGCTGTGGTTGGTGAAGACATGGTTAATTCATTGGTTTCAAATGAAGACAGAGAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGATAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTATCTTGCTTCTGTTCATATGGCTTTTGCTGGAATTGCACCGAAGAAGCTCACCGTCCTGTAGATTGTGCTACCGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTGGCTAATTCCAAACCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCTCCATGTAAATTTGAGTTTTGTTGGCTGTGTCTTGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTGGCTAAGCAAGATGGCGCGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCAAGGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTTGCAGATTTGAATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATTCACTGCACTCCTGAGTCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGCAGACGAGTTTTGAAATGGACCTATGCCTATGGATACTACCTGCCAGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCCGAGTCGGGATTAGAAAGGCTTCATCAATGTGCCGAAAAGGAGTTACTCCAGTTCCTCAATGCAGAAGGCCCCTCAAAAGAATTCAATGACTTCCGCACAAAGCTTGCTGGTTTGACCAGTGTTACTCGAAATTACTTCGAGAACCTGGTTAGAGCACTAGAGAATGGGCTTTCAGATGTGAACTCCCACGGAGTGAGCAGTGGCACGAGCTCGAAAAGCACAGCAGGAAGTAGTAGCAAAGCAGGGAGAAGCGGACGGGCTAAGGGGGGGATCATTCGAACCAGCGGTTCGACCAGAAGCGACGACAATGCAACTCATTGGTCATGTGAACACTGTACGTATGTGAACGCTAGATCCGCTACAATATGTGAGATGTGCCATCAACGCCATTGA 1764 44.67 MDSEDDLHYSTDDDCDFYSGDMDMGMAYYSDEDDPEAEDFVDDDTDDYFESRRREQNFTILNEFDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADETRVRKLVGLLEEPVVHASNAREHTCGICFESHPASRIKSAACGHPFCASCWEGYISTSINDGPGCLMLRCPVPSCGAVVGEDMVNSLVSNEDREKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCSYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGAYDEAEKRREMARNSLERYTHYYERWASNQTSRQKALADLNQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGVSSGTSSKSTAGSSSKAGRSGRAKGGIIRTSGSTRSDDNATHWSCEHCTYVNARSATICEMCHQRH 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1172637 1179194 - Carg05033-RA Car08g00187 152761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00187 587 Pfam Ariadne domain 353 515 IPR045840 -
Car08g00187 587 Pfam IBR domain, a half RING-finger domain 204 266 IPR002867 -
Car08g00187 587 Pfam IBR domain, a half RING-finger domain 283 331 IPR002867 -
Car08g00187 587 ProSiteProfiles TRIAD supradomain profile. 131 344 IPR044066 -
Car08g00187 587 ProSiteProfiles Zinc finger RING-type profile. 135 182 IPR001841 -
Car08g00187 587 MobiDBLite consensus disorder prediction 517 560 - -
Car08g00187 587 ProSitePatterns Zinc finger RanBP2-type signature. 564 583 IPR001876 -
Car08g00187 587 MobiDBLite consensus disorder prediction 517 538 - -
Car08g00187 587 Coils Coil 352 372 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00187 Car17g00550 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00187 Car-Chr8:1172637 Car12g00952 Car-Chr12:9609823 0 dispersed
Car17g00550 Car-Chr17:5131842 Car08g00187 Car-Chr8:1172637 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00187 K11968 - csv:101223037 1092.8