Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00189 ATGGACCTGCAGCTCTTGTGGGTTGGCTTCTTTTTGTGCTGTGGGTTTTGGACTCTTGCTTTGAGTGATCAAGATGTTTTCCTAAGCTTATCTTGTGGAGGAACTACCACCTTCACTGACTCCTCCAACATTTCATGGATTCCGGACATCGACTACATCGGCACCGGTAACACGTCAATCATCGACAAAGTCAAGGGTGGATCTTTTTCCACCGGCCATGTTCGGTTCTTCCCCGACACCCGAGCGCGAAAATGTTACAAGCTACCATTGAAAAATGGCTCCTCATCAGTTCTTATCAGAGCTCAGTTTGTGTACAAAAACTATGACAAGCTTGGAAAGCCCCCAGCATTTGCTGTTTCTATTGGGACAGCCATAACTACCAATGTGAACCTTACCTCTCATGACCCTTGGACTGAGGAGTTTGTATGGGCAGTTAACAAAGAAACTGTCTCCTTCTGTTTGCATTCCATTCCTGAGGGTGGAAGTCCCTTGATATCTTCGCTCGAACTCCGACCGCTGCCACGGGGAGCGTACGACGATGGCTTGCTTCCTAATCAGGCTCTTAGAAAGTCGTATCGAATCAATTGTGGTTACACTAATGGATCTCTCAGGTACCCAATCGATCGATACGATCGAATCTGGGACGCGGACGAGAACTTCAAGCCATTTCATGTGTCATCAGGGTTCAAAGTTGAGGCTAACTTTGATTCTATACAAGTGAAGGAAGCTCCACCAGCTGTAGTGGTTGAAACAGCTAGAGTTTTGGCAAGAAGAGATGAGCTGAGCTACAACCTTCCAGTTGAAGAACAAGGAGATTACTTTGTGATTTTGTATTTTGGTGGGATTCTTGCAGTTCATCCTTCATTTGATGTGTTGATGAATGGGAAAGTTATAGAATCAAATTACACCGTTGAAATGGGAGAGATGAGGGCTTTGTATGCCATTCAAGAGCAAATCAAGAGCTTGATTATCACTTTCAAGAGTGTTAAATTCTATCCTCAAGTCAATGCCATTGAGGTGTATCAAATTGTTCATGTTCCTTTGGAAGCTTCATCAACCACAGTTTCAGCCCTTCAGGTGATTCATCAATCTATTGGTTTGAATTTGGGATGGGAAGATGATCCATGCTCTCCAAGAACATGGGATCATGTTGGATGTGAAGGAAACCTCGTCACTTCTTTGGAGCTTTCCGACATCAACTTCAGGTCGATCAGCCCGACATTCGGCGACATTCTCGACCTCAAAATACTGGATTTGCACAACACTTCACTTACCGGGCAGATAGAAAATTTGGGCAGCCTGACCCATCTTGAAAATTTGAACTTGAGTTACAACAAGCTAACGTCATTTGGGACAGATTTCGAGAACCTAAGCAACCTCAAAATTCTGGACTTGCAGAACAACAGTCTGCAGGGAATTGTTCCAGACAGCTTGGGAGAACTTGAAGATCTTCACTTATTGAATTTGGAGAACAACAGGCTAGAAGGCACCCTTCCATTGGCTTTGAACAAAGGAACTCTGGAAATTAGAACATCAGGCAACCCTTGTCTGTCTTTCTCCACAATGACATGCAATGATGTTTCATCAAACCCAGCCATTGAAACGCCACAAGTCACAGTGGTTCCTGACAGAAAGAAGGATATGAGCAGCCACAATAGCAACAGTCACATGCCAATCACTGTCATTGCTTGTGCAGTTGCAGCAGTTTTGCTAGTCCTCATCACACTCTCTCTTTCATTTCTACTCTACATGAGGAAGCATTCTCAACACACAGCTCAACCCACATACTCAACAAAGGCAGCAATGGAGCTAAGGAATTGGAACGCTGCAAAAGTATTCTCATACAAGGAGATAAAGGCAGCTACAAACAACTTCAAGGAGGTGATTGGCAGAGGAAGCTTTGGATCTGTTTATCTTGGAAAGCTTCCTGAGGGAAAACTTGTGGCTGTCAAAGTAAGGTTTGACAAAACCCAACTTGGGGCTGATTCCTTTATCAACGAGGTTCATCTCCTGTCTCAAATTCGTCATCAAAATCTCGTTTGTTTGGAAGGATTTTGTAACGAATCGAAACGACAAATACTTGTTTACGAGTATCTACCGGGTGGATCCTTGGCTGATCACATCTATGGCAAGAACAAAAAAAGTGTCTCACTTAGCTGGATTAGAAGACTCAAAGTAGCTGTTGATGCAGCAAAAGGGTTGGACTATTTACACAATGGAAGTGAACCGAGGATAATCCACCGTGATGTCAAGTGTAGTAACATTCTTTTGGATATGGAAATGAATGCAAAAGTTTGTGACTTTGGGCTGTCCAAGCAACTACCACAGCCTGATGCTACTCATGTCACCACTGTTGTCAAGGGCACCGCTGGCTATTTGGATCCCGAGTAA 2391 43.87 MDLQLLWVGFFLCCGFWTLALSDQDVFLSLSCGGTTTFTDSSNISWIPDIDYIGTGNTSIIDKVKGGSFSTGHVRFFPDTRARKCYKLPLKNGSSSVLIRAQFVYKNYDKLGKPPAFAVSIGTAITTNVNLTSHDPWTEEFVWAVNKETVSFCLHSIPEGGSPLISSLELRPLPRGAYDDGLLPNQALRKSYRINCGYTNGSLRYPIDRYDRIWDADENFKPFHVSSGFKVEANFDSIQVKEAPPAVVVETARVLARRDELSYNLPVEEQGDYFVILYFGGILAVHPSFDVLMNGKVIESNYTVEMGEMRALYAIQEQIKSLIITFKSVKFYPQVNAIEVYQIVHVPLEASSTTVSALQVIHQSIGLNLGWEDDPCSPRTWDHVGCEGNLVTSLELSDINFRSISPTFGDILDLKILDLHNTSLTGQIENLGSLTHLENLNLSYNKLTSFGTDFENLSNLKILDLQNNSLQGIVPDSLGELEDLHLLNLENNRLEGTLPLALNKGTLEIRTSGNPCLSFSTMTCNDVSSNPAIETPQVTVVPDRKKDMSSHNSNSHMPITVIACAVAAVLLVLITLSLSFLLYMRKHSQHTAQPTYSTKAAMELRNWNAAKVFSYKEIKAATNNFKEVIGRGSFGSVYLGKLPEGKLVAVKVRFDKTQLGADSFINEVHLLSQIRHQNLVCLEGFCNESKRQILVYEYLPGGSLADHIYGKNKKSVSLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQLPQPDATHVTTVVKGTAGYLDPE 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1185609 1192062 + Carg05035-RA Car08g00189 152763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00189 796 ProSiteProfiles Leucine-rich repeat profile. 436 458 IPR001611 GO:0005515
Car08g00189 796 ProSiteProfiles Protein kinase domain profile. 623 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00189 796 Pfam Protein kinase domain 626 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00189 796 ProSitePatterns Protein kinases ATP-binding region signature. 629 651 IPR017441 GO:0005524
Car08g00189 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Car08g00189 796 Pfam Leucine rich repeat 436 494 IPR001611 GO:0005515
Car08g00189 796 Pfam Malectin-like domain 30 343 IPR024788 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00189 Car-Chr8:1185609 Car07g00150 Car-Chr7:889423 7.79E-69 dispersed
Car13g00515 Car-Chr13:7221255 Car08g00189 Car-Chr8:1185609 8.93E-28 dispersed
Car08g00189 Car-Chr8:1185609 Car06g00297 Car-Chr6:1656000 1.48E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89037 PF12819 Malectin_like 1.20E-53 CL0202 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00189 - - csv:101203637 1340.87