Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00201 CAGCGGTCACATGTTCCAGCTTTTGGGAACTGGGAAAGTGAAGGGAATGTTCCATACACAGTGTTCTTCGACAAGGCCAGAAAGGGCAGAGGCGGCGGACCCATCAGAAACCCCAACGATCCTGAGGAATATCCAGAAATGTTCGCCGCCGACACACCCAAAAAGGACGATTCTCCAGCTCCGGCGCCGATACCCACGACCCACGAGAGGAGGCAGAGCCGTGAATACGGCAGCTCCCCTGCCCACCGTGAAAATCCCAGCCGAAAACAGAGTGGAACAGAGTATAGCATCGACCGCTCGCCTCTCCACCGCCAGGCAAAGCCGTCGGGAAGAGAGAGCCCAATGGTGGAGAACAAGGGGTCCGATGGTGGCTATGGAAATCGCGGGAAATCTAGAACGAAGCCGCTTCAGGCGGAAGGGACGGCAGTGCCGAAATTTGGGTCGTGGGATGTGAACAATCCGGCGTCGGCGGACGGTTTTACTCACATATTTGGTGAAGTTCGGAAGGAGAAGTTGGGGCCGGGAACGCCGCCGCGGCAGCCGCATTCTTCTTCGCCGTACAACAATCTTAATAACCCAAAAGCCGACAACAGCGCCAAGTTCTGCAGTTCAATTTTGTTTCTGTTTGTTTCTGGATGTTCGATTGAAGGGATTATGGTGAGGGAACAACGAGTTGAATCGTTTTATGCTAAACTTCGTGAATCTGTGACGGCTTCTTCTTTGTCTCCTCTCCTTATTTTTCCTTCCACTTCTGATGTTGACTCGCTCTGTGCCTTGAAAATTATTTTTCAAGTTCTTGAATCTGATTCGATTCGATACGCTTGTTATCCCGTGTCTTCTTTTCAAGAAATTCATAAATATGCTGGTCCTAGTTTGAGTTCGTCGTCTGCCGATCCGATTTCGATCCTTTTGATTAACTGGGGATGTCATCGAGATCTTAGGAAGGTTTTGAGTTTAGGTCCGGCTGCTCATGTGTTTGTTGTTGATAGTCATCGTCCAATTCATCTTCATAATCTGAGCGATCAGAATGAGCAAGTGGTTGTTCTTTACACGAAAGACGATGAGCTCCAGGCTGACTTAGCTTATGATTTCGATGTCTCTGCATTGGCGAATGCGAGCGATTTGAACAGCGATGATGAGATTGATGAGGAATTGGATAGCGACGATGATAACGATAGTGAAAACGACGAAGAAGATCGAGGCGGATCGAGGAAACGGAGGAGAGTTGATAAGGAAAATGAGGATGATCCTGTTCAGATTTTCAGGAAATTGAAAAGAGGATACTATTATATGGGTACCTTCCATGGTAAGCCTTCAGGGTGTTTGATGTATGATCTGTCTCATTCATTGAGGAAGAACACAAACGAATTACTATGGCTGGCTTGTGTGTCGTTAACTGATCAGTTTGTTCATGAAAGATTAACGGATGAGAGGTACCAAGCTGGGGTTATGGAGCTTGAACAACACATAAACAGTTCAGGGAACTTGAATGCTGTAAACTCTGTTACACTCAAGGATGGCACCAAGATCCGAGCTCCTGAGGCATCAAGAATCACTTATGATGATGAGCCAAGATTAATGCTGTTGCAGGAGTGGAGCTTGTTTGATTCAATGCTGTGTTCTTCATACATTGCTACCAAGTTAAAGACATGGAGTGACAATGGAATGAAGAAGCTGAAATTGCTTCTAGCACGCATGGGGTTTGCACTTGTGGATTGCCAACAAAAGTTCCAATACATGAATCTCGAAGTGAAACGAAAAATGAAGGACGAATTCGAGCGATACCTACCCGAATACGGCCTAAACGATTTCTACTACAGAAGTTTCTTGAGGTTACATGGTTACAGCTCAAAAGTGTCAGCAGCAGATGTGGTATATGGGGTCACTGCATTGCTTGAATCCTTTGTGAAATCAGATGGGTCAAGTGCTTCCAAGAAGTTTGGAGTGGCTTATGATGCATTGTCATTGAGCAATCTTGACAAGCTCAAAGATGGAATGCAGCAGGCGATCAAGGTCCAGAGGTCAGTTCTTAGACAGGGGAGCTCTGCAATTACAAAGAGTGGATGTATAAGAAGTGGGAGGAAGTTTCGTTGGGTGAAGCTTGAAGATTCTGTGGACACCAAATTTCTGGGCTATCCTCAAGCACTCACCAAGTTCTGCTACTTCATAATGGATGCTTTGCGAGAGAAAGGAGCTAGAATGAAGCCATTGCTATGTGCTTGTGTGTCTCAAGAGCCGAACAAAGTATTGGTCGTTGGTGTTTGCGGGAAGCCTCGGCTTGGGGCGTCTCGAGGCAATGCATTTGGGAGAGCGTTTCGAAACGCTGCGGAGGAAATCAGCGCGGAGTTTTTCCACGAGATGTTTGAATCCTCGTGGATTCTTCTTGATGCAACTTCAGTTAACTCTTTCATGGTCAGATTGACTGAGAAGCTCTAA 2436 46.51 QRSHVPAFGNWESEGNVPYTVFFDKARKGRGGGPIRNPNDPEEYPEMFAADTPKKDDSPAPAPIPTTHERRQSREYGSSPAHRENPSRKQSGTEYSIDRSPLHRQAKPSGRESPMVENKGSDGGYGNRGKSRTKPLQAEGTAVPKFGSWDVNNPASADGFTHIFGEVRKEKLGPGTPPRQPHSSSPYNNLNNPKADNSAKFCSSILFLFVSGCSIEGIMVREQRVESFYAKLRESVTASSLSPLLIFPSTSDVDSLCALKIIFQVLESDSIRYACYPVSSFQEIHKYAGPSLSSSSADPISILLINWGCHRDLRKVLSLGPAAHVFVVDSHRPIHLHNLSDQNEQVVVLYTKDDELQADLAYDFDVSALANASDLNSDDEIDEELDSDDDNDSENDEEDRGGSRKRRRVDKENEDDPVQIFRKLKRGYYYMGTFHGKPSGCLMYDLSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSSGNLNAVNSVTLKDGTKIRAPEASRITYDDEPRLMLLQEWSLFDSMLCSSYIATKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFERYLPEYGLNDFYYRSFLRLHGYSSKVSAADVVYGVTALLESFVKSDGSSASKKFGVAYDALSLSNLDKLKDGMQQAIKVQRSVLRQGSSAITKSGCIRSGRKFRWVKLEDSVDTKFLGYPQALTKFCYFIMDALREKGARMKPLLCACVSQEPNKVLVVGVCGKPRLGASRGNAFGRAFRNAAEEISAEFFHEMFESSWILLDATSVNSFMVRLTEKL 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1255326 1259114 + Carg05048-RA Car08g00201 152775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00201 811 Pfam CDC45-like protein 638 810 IPR003874 GO:0006270
Car08g00201 811 Pfam CDC45-like protein 245 635 IPR003874 GO:0006270
Car08g00201 811 MobiDBLite consensus disorder prediction 377 396 - -
Car08g00201 811 MobiDBLite consensus disorder prediction 377 413 - -
Car08g00201 811 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 138 172 IPR008700 -
Car08g00201 811 MobiDBLite consensus disorder prediction 25 136 - -
Car08g00201 811 MobiDBLite consensus disorder prediction 397 413 - -
Car08g00201 811 MobiDBLite consensus disorder prediction 169 191 - -
Car08g00201 811 MobiDBLite consensus disorder prediction 83 98 - -
Car08g00201 811 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00201 Car-Chr8:1255326 Car11g01339 Car-Chr11:10993936 1.55E-08 dispersed
Car14g01704 Car-Chr14:13536093 Car08g00201 Car-Chr8:1255326 1.36E-06 dispersed
Car17g01184 Car-Chr17:9085548 Car08g00201 Car-Chr8:1255326 0 transposed
Car18g00542 Car-Chr18:4462656 Car08g00201 Car-Chr8:1255326 6.05E-17 transposed
Car17g01183 Car-Chr17:9082226 Car08g00201 Car-Chr8:1255326 6.86E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00201 K06628 - csv:101221761 1062.75