Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00218 ATGGAGAACGAATTCTTCCTCAATGCTACTGAAATCCCTCAATCTCTTATGCATTTCGACTCCAATCCTTCCATGGCGACCTGGAACCACTCCTTTTCGTCCGCCATGGATGTTCAACCTCAACAACTTCAGCTTCATGTTCCTGAGTTCAATAATCACTGTTCTTCCTCTCATCCTTCGCCTCCGGATTGCTATCTCAATCCAGCTCCTCAACAGAGCTTCCAATTCGATTCCGCTCTGAGTTCCATGGTTTCTTCTCCAGCGCCCTCCAATTCCAACCCTACCAACGATAGCTTTGTGATCAGAGAACTGATCGGAAAATTAGGCGCAAATTCCGGGAGGAGAATCTCGGAATTGAACTCTTCTTCTTCTTCTTCCAGTGTGGCGGAGTTTTCGTCCGATCCTGGATTTGCTGAGCGTGCTGCTAGGTTTTCGTGTTTTGGAAGTAGGAGCTTCAATGGACGTCAGTTGACGAATGAATTCGGTAATTTCAGATCTAACCTCTCGATCGCGAACGAGAAATTGAGCCGAGTTTCGAGCAGTCCGTCGCTCAAAGCCCTCGGATCTGAAACGAAGTTGCAAGAACAGAAGAACAATTCCTCGTCGCAAGAAGACGAGTCGTCTCTCTCGAATCCGGATAAGGCGATTTCGAATCCACGGAAGAGAAAAGCAATTTCGAAGGCGAAACTCAAAGAGCCGATTGCTGAAACTCCCGAGAAAGGAAGCCCGAAGAAAATCAAGGCAGTGGAAACGAAGGAAAACGTGAAAACAGAAGAGGATTCGAAGAAAACCGATGCAAATTTAGCCGAAGAGAAGCAACAAAAAACGAACACGAATCCTACCGAGCCTCCAAAAGATTACATTCATGTCCGAGCAAGAAGAGGCCAAGCTACTGACAGCCATAGCCTCGCTGAAAGAGTCAGAAGAGAGAAAATCAGTGAACGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTTACTGGAAAAGCTCTAATGCTTGATGAGATTATCAACTATGTGCAGTCATTGCAACACCAAGTTGAGTTTCTATCCATGAAGTTAGCATCTGTGAATACAACCAGAGTGGATTTCAACATGGATTCTCTGATCTTAAAACAAACGTACCAATCAGCCACCAGTTTGCCACATCCTATAGATTCCTCAGCTTCAAGCTATTATGGGCACCACCACCACCACCAAAAGCCCTCTCTCCCAGCCACCTCCATGGACCCTCTCGACTCTGTTTCATGTCAAAATCTTCCAATTCAACTCCCTCCTCTCAGTTCCTTTCCTCTAAATCCCTCTCAGTATCCAAGCTTTGGGGAGGAGGATGAGCTTCTAAGCATTGTTCATATGGGATTCGTCCAGAATCAGCCCCAAGGCAAAAACTATGATTGCAATCTCACAGCTTCTTCAACATAG 1431 45.77 MENEFFLNATEIPQSLMHFDSNPSMATWNHSFSSAMDVQPQQLQLHVPEFNNHCSSSHPSPPDCYLNPAPQQSFQFDSALSSMVSSPAPSNSNPTNDSFVIRELIGKLGANSGRRISELNSSSSSSSVAEFSSDPGFAERAARFSCFGSRSFNGRQLTNEFGNFRSNLSIANEKLSRVSSSPSLKALGSETKLQEQKNNSSSQEDESSLSNPDKAISNPRKRKAISKAKLKEPIAETPEKGSPKKIKAVETKENVKTEEDSKKTDANLAEEKQQKTNTNPTEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLASVNTTRVDFNMDSLILKQTYQSATSLPHPIDSSASSYYGHHHHHQKPSLPATSMDPLDSVSCQNLPIQLPPLSSFPLNPSQYPSFGEEDELLSIVHMGFVQNQPQGKNYDCNLTASST 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1369372 1371584 + Carg05065-RA Car08g00218 152792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00218 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 346 IPR011598 GO:0046983
Car08g00218 476 MobiDBLite consensus disorder prediction 392 413 - -
Car08g00218 476 MobiDBLite consensus disorder prediction 228 270 - -
Car08g00218 476 MobiDBLite consensus disorder prediction 175 215 - -
Car08g00218 476 Pfam Helix-loop-helix DNA-binding domain 300 347 IPR011598 GO:0046983
Car08g00218 476 MobiDBLite consensus disorder prediction 175 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00218 Car-Chr8:1369372 Car14g01350 Car-Chr14:11392293 1.04E-79 dispersed
Car10g00020 Car-Chr10:102908 Car08g00218 Car-Chr8:1369372 1.38E-44 dispersed
Car13g00670 Car-Chr13:8171756 Car08g00218 Car-Chr8:1369372 3.53E-23 dispersed
Car18g00247 Car-Chr18:1434555 Car08g00218 Car-Chr8:1369372 4.60E-45 dispersed
Car17g01198 Car-Chr17:9166817 Car08g00218 Car-Chr8:1369372 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3941 PF00010 HLH 3.60E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00218 - - csv:101204984 643.654