Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00219 ATGTCTCGAACACCGAATTTTGAGTTCCAAGAATGGTGGAACAAGCAGAGAGAAAAAGAACACGACGAACTCCGACTGGAAAAGTCCGGCAACTTCCCGACCTCACCTGCATTTCTATCTCTTGAGATCCGGAGTTCTGGGAGCCCTGGAGATCGAACAGCCGATAAGGACCGGGCGAGAACGAGGAGTGCCCGCCAGATTTCTTGGGTTTGGCTGTTGAAATTCCAGCAGATTGCTGGTTCTCTGGCTTCAATCACCAATGGGTTCGTTCATCTTATCCGCACTGCCAATCGTCGGATTGCATCACATGATTCTCCAGCTGATTCGGCCTCGTCTCGGCTCTATAAGATAATCAAAGTGTTCTTGATTGTGGTGCTTCTGTTGCTCGTTTTTGAGCTTGTGGCGTACTTCAATGGCTGGCATTTCAAACCCCCTAACGTGAGTTCCGCTTCTGCGGAAGTGCTTGGAATGATTGGGTTTGTGTATGCTAGTTGGCTTGAGATTCGAGCAAATTACTTGGCTCCACCGCTGCAGAGCTTGATCAATTTGTGCATTGTGTTATTCCTGTTCCAGTCAGTGGATCGTTTGGTTTTAATGATGGGGTGTTTTTGGATAAAATTCTGGGGATTGAAGCCCGTGGCGGCGTTTGAGTACTCGGACACTGATGAGAATGCTCCTGAGGATTATCCAATGGTATTGGTGCAGATTCCCATGTGCAATGAGAGGGAGGTCTACCAGCAATCTATTGCAGCTGTTTGTATCCAGGACTGGCCAAAGGATAGAATACTTGTTCAGGTTTTAGATGATTCTGATGAAGTAGAAGTTCAACAACTTATCAATGCTGAAGTACAAAAATGGCAACAAAGAGGTGTCCACATATTGTATAGACACCGCCTCATGCGTACAGGCTACAAGGCAGGGAATCTCAAATCTGCTATGGCATGTGATTATGTAAAAGATTACGAGTTTGTGGCAATCTTTGATGCAGATTTTCAGCCAGGACCAGACTTTTTAAAGAAAACCATTCCACATTTCAAGGGGAATGATGAACTTGCATTGGTCCAAACAAGGTGGTCATTTGTGAACAAGGACGAAAATTTGCTCACAAGATTGCAGAACATAAATTTATCCTTCCATTTTGAGGTTGAGCAGCAAGTAAATGGCATGTTTATCAACTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGAATGTGGAGGCTGGTTAGAAAGAACAACTGTTGAGGACATGGATATTGCAGTTCGTGCCCATCTTTGTGGCTGGAAGTTCATATTTCTTAATGATGTGAAGTGCCTTTGTGAACTTCCGGAATCATATGAAGCGTACAAGAAACAACAACACCGATGGCATTCAGGCCCAATGCAGCTATTTCGTTTGTGCTTCTCTGATATACTCAAATCGAAGGTAAGTTGGAAGAAGAAAGCTAATTTGATATTTCTTTTCTTCCTTTTGCGAAAGCTTATCCTTCCCTTTTACTCATTTACCTTGTTCTGCATAATTCTACCCCTTACCATGTTCCTTCCAGAGGCTCATCTACCAGCTTGGGTTGTTTGCTATGTTCCCGGAATGATGTCCATCTTAAACATTCTCCCTTCACCACAGTCGTTTCCTTTTATAGTCCCCTATCTTCTCTTTGAAAACACCATGTCTGTTACCAAATTCAATGCCATGATATTGGGATTATTCCGCTTTAAAAGTTCGTACGAATGGATAGTAACAAAAAAACTAGGAAGATCATCCGAAAACGATCTTGTTACTTTTGAAAAAGAACAAGAACTTTTGGTTGAAGGTACTACTAGTCTTCATCGGTCATCCTCGGAATCAGGTCTTCTGGACCTAACCAAGCTCGAGATATCGAAAAAAACAGGGAAATGCAAAAGAAATCGTCTGTACAGGAAGGAATTGGCTCTTGCATTCATTTTGTTAACAGCCTCCGTCAGAAGTTTGTTATCTGCACAAGGAATTCACTTCTACTTCCTATTATTTCAAGGTATCACTTTTCTAGTGGTGGGTCTCGATTTAATTGGAGAGCAGGTGAGCTAA 2082 42.7 MSRTPNFEFQEWWNKQREKEHDELRLEKSGNFPTSPAFLSLEIRSSGSPGDRTADKDRARTRSARQISWVWLLKFQQIAGSLASITNGFVHLIRTANRRIASHDSPADSASSRLYKIIKVFLIVVLLLLVFELVAYFNGWHFKPPNVSSASAEVLGMIGFVYASWLEIRANYLAPPLQSLINLCIVLFLFQSVDRLVLMMGCFWIKFWGLKPVAAFEYSDTDENAPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDRILVQVLDDSDEVEVQQLINAEVQKWQQRGVHILYRHRLMRTGYKAGNLKSAMACDYVKDYEFVAIFDADFQPGPDFLKKTIPHFKGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDIAVRAHLCGWKFIFLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFSDILKSKVSWKKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMFLPEAHLPAWVVCYVPGMMSILNILPSPQSFPFIVPYLLFENTMSVTKFNAMILGLFRFKSSYEWIVTKKLGRSSENDLVTFEKEQELLVEGTTSLHRSSSESGLLDLTKLEISKKTGKCKRNRLYRKELALAFILLTASVRSLLSAQGIHFYFLLFQGITFLVVGLDLIGEQVS 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1375560 1382932 + Carg05066-RA Car08g00219 152793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00219 693 Pfam Glycosyl transferase family group 2 324 530 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00219 - - - csv:101216681 1223.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00219 Car-Chr8:1375560 Car15g00304 Car-Chr15:1646301 0 dispersed
Car17g01200 Car-Chr17:9173740 Car08g00219 Car-Chr8:1375560 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00285 CST 177 337 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Car20g00761 CST 176 338 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
Car01g01200 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1090.5
Car09g00462 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.5
Car04g02628 CST 4 661 REM Transcription Factor Family AT2G24630 69.6 2.9e-267 918.3
Car15g00304 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 1.9e-266 915.6
Car01g01374 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 3.9e-264 907.9
Car09g00263 CCT 1 706 REM Transcription Factor Family AT2G24630 64.6 3.9e-264 907.9
Car12g00556 CCT,CST 5 700 REM Transcription Factor Family AT2G24630 65.3 4.2e-258 887.9
Car08g00219 . 5 693 REM Transcription Factor Family AT2G24630 62.2 7.6e-244 840.5
Car17g01200 . 5 694 REM Transcription Factor Family AT2G24630 61.7 1.3e-243 839.7
Car01g01200 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1090.5
Car09g00462 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.5
Car04g02628 CST 4 661 REM Transcription Factor Family AT2G24630 69.6 2.9e-267 918.3
Car15g00304 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 1.9e-266 915.6
Car01g01374 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 3.9e-264 907.9
Car09g00263 CCT 1 706 REM Transcription Factor Family AT2G24630 64.6 3.9e-264 907.9
Car12g00556 CCT,CST 5 700 REM Transcription Factor Family AT2G24630 65.3 4.2e-258 887.9
Car08g00219 . 5 693 REM Transcription Factor Family AT2G24630 62.2 7.6e-244 840.5
Car17g01200 . 5 694 REM Transcription Factor Family AT2G24630 61.7 1.3e-243 839.7
Car01g01200 . 1 695 REM Transcription Factor Family AT2G24630 77.6 0.0e+00 1090.5
Car09g00462 . 1 695 REM Transcription Factor Family AT2G24630 76.5 0.0e+00 1080.5
Car04g02628 CST 4 661 REM Transcription Factor Family AT2G24630 69.6 2.9e-267 918.3
Car15g00304 CST 6 665 REM Transcription Factor Family AT2G24630 68.6 1.9e-266 915.6
Car01g01374 CCT,CST 1 706 REM Transcription Factor Family AT2G24630 64.5 3.9e-264 907.9
Car09g00263 CCT 1 706 REM Transcription Factor Family AT2G24630 64.6 3.9e-264 907.9
Car12g00556 CCT,CST 5 700 REM Transcription Factor Family AT2G24630 65.3 4.2e-258 887.9
Car08g00219 . 5 693 REM Transcription Factor Family AT2G24630 62.2 7.6e-244 840.5
Car17g01200 . 5 694 REM Transcription Factor Family AT2G24630 61.7 1.3e-243 839.7
Car02g00285 CST 177 337 REM Transcription Factor Family AT1G49480 72.0 7.2e-58 221.1
Car20g00761 CST 176 338 REM Transcription Factor Family AT1G49480 70.6 4.7e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007034 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g00219 Car_Chr08 FPKM 2.677325 4.249677 1.307354 1.001888 6.937945 6.345796 9.173293 1.640743 1.97194 2.084601