Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00220 ATGGATGAGGATTTTGATATCCCTGCGGCGGCTGACATGAATGACGACTTGGATTTTCCTGATGAAACCGTTGCTCTCAAGGTTGGGGAGGAGAAAGAAATTGGAAATCAGGGGTTGAAGAAGAAGCTTTTGAAGGAAGGTGAAGGATGGGTCACTCCTGAAAATGGCGATGAGGTTGAAGTTCACTATACTGGGACTTTGCTTGATGGGACTCAGTTTGATTCGAGCCGCGATCGTGGAACTCCGTTCAAGTTCACTCTTGGCCAAGGACAAGTGATTAAAGGATGGGATCTGGGTATCAAAACAATGAAGAAAAGTGAAAAAGCTCTTTTTACCATTCCTCCTGACTTGGCATACGGTGAATCTGGATCCCCACCAACCATTCCTCCTAGTGCTACATTGCAGTTTGATGTTGAGCTACTATCTTGGACAAGCGTCAAAGACATATGCAAGGATGGAGGAATATTCAAGAAGATCCTAACTGAAGGACAGAAATGGGAAAATCCAAAAGACCTTGATGAAGTGCTAGGCAAGTGCATATTTAATTTTGAAGCTAAGCTGGAAGATGGAACACTTGTTGCAAAAGCAGATGGAGTGGAATTCACCGTTCGTGATGGTTACTTTTGCCCTGCTCTTGCAAAGGCTGTAAAAACCATGAAGCTAGGTGAAAAGGCACTCCTCACGGTGAAACCACAATATGGGTTTGGGGAGAAGGGTAAACCAGCCTCTAGCAATGAAGGTGCAGTTCCACCAAATGCATCTCTCGATATTACACTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAGAAGGTTATCAAGAAAATTCTGAAAGAAGGAGAAGGGTATGAGAAGCCAAACGATGGCACTGTCGTCAAAGTGAAATTGGTTGGGAAGTTGGGAGATGGAAAGATATTTTTGAAGAAGGGATATGGTGATGGTGAAGAGCCATTTGAGTTTAAAACAGATGAAGAACAAGTGATTGATGGCCTCGACAAAGCTGTGGCAACAATGAAGAAAGGCGAGACAGCCCTGCTGACTATAGCACCTGAGTATGCTTTTGGTTCATCTGAGTCAAAACAGGAGTTAGCTGTAGTTCCTCCAAACTCGACTGTGTATTACGAAGTTGAACTAGTGGCTTTTGACAAGGAGAAGGAATCATGGGATATGAATACCCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTTAAGGCTGGAAAATTTGCCAGAGCCTCCAAGAGATATGAGAAGGCTGTGAAGTTCATTGAACACGATTCTTCCTTTAGCGAAGAAGAGAAAAAACAGGCTAAGGCATTGAAAGTTGCATGCAATTTGAACGATGCAGCTTGTAAATTGAAGCTAAAGCTGTACAAGGAGGCAGAGAAATTGTGCACCAAGGTACTGGAACTCGAAAGTTCAAATGTTAAAGCTCTTTATAGAAGGGCTCAAGCATATATCCAACTAGCTGATTTGGATTTGGCAGAAGTTGACATCAAGAAAGCTCTCGAAATCGATCCAAATAACAGGCATGGATGTGAAATTGGAGTACAAAACTCTAAAGGAGAAGGTGAAGGAATACAACAAGAAGGATGCCAAGTTTTACGGCAACATGTTTGCCAAAATGAATAA 1662 42.48 MDEDFDIPAAADMNDDLDFPDETVALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKSEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGQKWENPKDLDEVLGKCIFNFEAKLEDGTLVAKADGVEFTVRDGYFCPALAKAVKTMKLGEKALLTVKPQYGFGEKGKPASSNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGTVVKVKLVGKLGDGKIFLKKGYGDGEEPFEFKTDEEQVIDGLDKAVATMKKGETALLTIAPEYAFGSSESKQELAVVPPNSTVYYEVELVAFDKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKFARASKRYEKAVKFIEHDSSFSEEEKKQAKALKVACNLNDAACKLKLKLYKEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEVDIKKALEIDPNNRHGCEIGVQNSKGEGEGIQQEGCQVLRQHVCQNE 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1383084 1387578 - Carg05067-RA Car08g00220 152794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00220 553 Pfam Tetratricopeptide repeat 486 519 IPR001440 GO:0005515
Car08g00220 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 293 386 IPR001179 GO:0003755
Car08g00220 553 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Car08g00220 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 176 265 IPR001179 GO:0003755
Car08g00220 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Car08g00220 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 180 261 IPR001179 GO:0003755
Car08g00220 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 287 383 IPR001179 GO:0003755
Car08g00220 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00220 Car-Chr8:1383084 Car14g01352 Car-Chr14:11408176 0 dispersed
Car18g01101 Car-Chr18:11036446 Car08g00220 Car-Chr8:1383084 5.30E-10 dispersed
Car08g00220 Car-Chr8:1383084 Car08g00221 Car-Chr8:1388154 6.96E-26 tandem
Car19g00349 Car-Chr19:5384217 Car08g00220 Car-Chr8:1383084 1.85E-10 transposed
Car17g01201 Car-Chr17:9178519 Car08g00220 Car-Chr8:1383084 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00220 K09571 - csv:101214513 926.391