Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00246 ATGGACCAGTCGGCCAATATCGTTGTTGGTTCCCATATATGGGTGGGAGATTTAGAGTCCGTTTGGATTGATGGGGTCGTATTGAACATCACCGGGGAAGATGCTGAGATTCAAACTAGTGATGGAAGACAGGAGATACCTGAGCTGTTGGGCTGGACTAATTATAATAGCCTTGAGAATTGCCCATCAGTATCTTACCTATTGAATTTATGTTGGCAGGTGGTTGTAAAACTGTCAAATCTATATCTAAGGGATGCAGAAGCTCCTGCTACTGGAACTGATGATATGACTAGAATGTCATATTTGAATGAGCCAGGGTTGCTGCATAATTTGGCTACCAGATATGGAATAAATGAAATCTATACTTATACTGGAAATATTCTTATTGCCATCAATCCATTCCAAAGTATTGAAAAACTGGCTATGATAAATTATGGGAAAAGCAACTCTATTCTAGTAAGTGGTGAAAGTGGGGCTGGCAAAACTGAAACCACCAAAATGCTTATGTGTTACCTTGCATTTTTGGGCGGCCATGCTGCATCTGAAGGACGGACTGTTGAACAACAAGTTTTAGAATCAAATCCAGTTCTTGAAGCTTTCGGCAATGCAAAAACAGTAAGAAACAACAATTCAAGCCGTTTTGGGAAATTTGTTGAGATCCAATTTGACAAGAATGGAAGAATATCAGGAGCTGCCATCCGAACATATCTTCTTGAGAGATCACGGGTTTGCCAAATATCAGACCCTGAGCGCAACTATCATTGCTTTTATCTTCTCTGTGCAGCTCCACCTCAGGAGAGAGAGAAATATAAGCTGGGAAATCCAAAATCATTTCACTATCTAAACCAATCAAATTGTTATGAACTGACTGGTGTGAATGATGCTCACGATTATCTTGCTACAAAGAGAGCCATGGATATTGTTGGAATATGTGAACAGGAGCAGGATGCAATTTTCAGAGTTGTGGCTGCAATTCTTCATCTTGGTAATATTGACTTTGCAAAAGGAGAAGAGTCCGATTCATCATTTGTAAAAGATGAAGAATCAAAATTTCACCTTGACATGACAGCAGAGCTTCTCATGTGCGATCCCCAAGCATTAGAAGATGCTCTTTGCAAGCGCATGATGATTACACCAGAGGACGTTATCAAGAAAAGTCTTGATCCGCTTGGTGCAACAGTCAGCAGGGATGGATTAGCCAAGACAATATATTCTCGTTTGTTTGACTGGTTGGTAGGTAAAATCAATGTTTCCATCGGGCAAGATCCTGGCTCTGAATATCTGATCGGTGTACTGGATATTTACGGTTTTGAGAGCTTTAAAAATAATAGTTTTGAGCAATTCTGCATCAATTACACAAATGAAAAGCTGCAGCAACATTTCAACCAGCACGTGTTCAAGATGGAGCAAGAAGAATATGTAAGAGAGGAAATTGATTGGAGCTACATAGAATTTGTTGATAATCAAGATGTCCTTGACCTCATTGAGAAGGTTCAATTTTTCTTCATAACTTTGCTACTGGATTTTAAAGGCCACTCAAAAACTTGTGTAATTGCTTTCACCTCTTCTAAAGGAATACAGAAAGTACTTCTCACGTCTCACCTTATTTTCTATCTTGATATACATTACGGAAGGAAACCAGGTGGAATCATTGCTCTTCTTGATGAAGCATGCATACTCCCAAAATCAAATCATGAATCATTTGCACAAAAGCTGTACCAAATCTTCAAAAATCATAAACGCTTCATCAAGCCAAAATTGGCTCGCTCAGAATTTGCTATTGTTCATTATGCAGGAGATGTTCTATATCAGTCGGAACATTTTCTAGACAAAAATAAAGATTATGTTGTCCCTGAACATCAAGATTTGTTAAGTGCTTCAAAATGTTCTTTTGTTGCTGGTCTCTTCCCTCCTTTTCCTGAGGACATGGCCAAATCATCAAAGTTTTCTTCAATTGGCTCTCGTTTTAAGTTACAGCTACAGCAGTTGATGGAAACATTAAATTCGACAGAACCCCATTATATAAGATGCGTGAAGCCCAATACTGTCCTGCAACCTGCCATATTTGAGAATGCGACTGTTATGCAACAATTACGTTCTGGTGGTGTTCTGGAGGCAGTTAGAATCAAATGTGCAGGATACCCTACTCATAGAACATTTTCCGAATTTTTATCTCGATTTGGAGTTCTTGCACCCGAGGTATTGGAAGGGGACTATGAAGAGAAGGTAGCATGCGGAAAGATTCTAGAGAAGATGGGACTTAAAGGTTATCTGCATATCCGAACTCGAATTGATCGTAAAAAGTACATAGCTAAGAAAAGAGGTTGCGTTCTTCTACAGTCATATTGGAGAGGCATTCGTGCTCGGGAATTGTATGAAATTAAAAGAAGAGAAGCAGCTGCCATCAAAATTCAAAAGACTATTCGTGGATACCTTGCCAGGAAACTCCATGTTAAAACAAGGATCTCTACTGTTGTTCTTCAGGCTGGTATACGAGCAATGATTGCTCGCTGTGAATACAGACATAGGAGGAGGCAGGTTAAGGCTGCAATAGTTATTCAATCACATGGGCGTCGGTATAGATGCGCTTCAGAGTATAAGATGATTAGAAAACAATCTACCATTGACGAAGGTCTTACGAATCAAAGGATGACTAACTTGGAAGAAACAGAGGAGGATCTGGTCTCGCCTTGTTCGTTGCTTAATAGCAGTACAGACTCCATTGATGAAACAATTGAAATGATTGCCAAGGAAAGCCATGTCTATCCGAAAGAAGTAGAAGAAGCATACTTTATTATTAAAGAGCCCACTAGTCCGGTTAAAGATACCGAACAAGTAGGGGCTCTCACAGCAGAAGTGGCTAACCTAAAGGCACTGTTGCAGGCTGAAAGACAAAGAGTTAATGAAAGTGAAAGGAAGTGTGCTGCAGCACAGAAATTAAGCGAGGAAGGACGTAAAAAACTAAAAGAAAACGAAAGGAAGGTGCAGCAACTTCAAGATTGCATAAGCAGGATGGTACATTGCATGGCAAATCAAATCTCGGAGATGAAAATGATCATGAGTTCTAACTCAGGTGCATCTAGTTCGATCCCAAGCGAGGTTCTGACGGAGGCTACATCTAGTTGCTCTGATTCATCATCAGAAGACTTCACCTTTCCTGTCCCGACTCCATCTACCCCAGCTTTCTCTTCATTCGGTACCAACAATTTTCAGCTGATTGTGCAGGATATTTCAGCTGCAGAAATTCCAGGTACTTCTGATTTACAACAATAG 3273 40.05 MDQSANIVVGSHIWVGDLESVWIDGVVLNITGEDAEIQTSDGRQEIPELLGWTNYNSLENCPSVSYLLNLCWQVVVKLSNLYLRDAEAPATGTDDMTRMSYLNEPGLLHNLATRYGINEIYTYTGNILIAINPFQSIEKLAMINYGKSNSILVSGESGAGKTETTKMLMCYLAFLGGHAASEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPPQEREKYKLGNPKSFHYLNQSNCYELTGVNDAHDYLATKRAMDIVGICEQEQDAIFRVVAAILHLGNIDFAKGEESDSSFVKDEESKFHLDMTAELLMCDPQALEDALCKRMMITPEDVIKKSLDPLGATVSRDGLAKTIYSRLFDWLVGKINVSIGQDPGSEYLIGVLDIYGFESFKNNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVREEIDWSYIEFVDNQDVLDLIEKVQFFFITLLLDFKGHSKTCVIAFTSSKGIQKVLLTSHLIFYLDIHYGRKPGGIIALLDEACILPKSNHESFAQKLYQIFKNHKRFIKPKLARSEFAIVHYAGDVLYQSEHFLDKNKDYVVPEHQDLLSASKCSFVAGLFPPFPEDMAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNTVLQPAIFENATVMQQLRSGGVLEAVRIKCAGYPTHRTFSEFLSRFGVLAPEVLEGDYEEKVACGKILEKMGLKGYLHIRTRIDRKKYIAKKRGCVLLQSYWRGIRARELYEIKRREAAAIKIQKTIRGYLARKLHVKTRISTVVLQAGIRAMIARCEYRHRRRQVKAAIVIQSHGRRYRCASEYKMIRKQSTIDEGLTNQRMTNLEETEEDLVSPCSLLNSSTDSIDETIEMIAKESHVYPKEVEEAYFIIKEPTSPVKDTEQVGALTAEVANLKALLQAERQRVNESERKCAAAQKLSEEGRKKLKENERKVQQLQDCISRMVHCMANQISEMKMIMSSNSGASSSIPSEVLTEATSSCSDSSSEDFTFPVPTPSTPAFSSFGTNNFQLIVQDISAAEIPGTSDLQQ 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1546369 1565635 + Carg05093-RA Car08g00246 152820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00246 1090 ProSiteProfiles Myosin motor domain profile. 91 796 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car08g00246 1090 Coils Coil 946 980 - -
Car08g00246 1090 Pfam IQ calmodulin-binding motif 823 841 IPR000048 GO:0005515
Car08g00246 1090 Pfam IQ calmodulin-binding motif 799 816 IPR000048 GO:0005515
Car08g00246 1090 Pfam IQ calmodulin-binding motif 775 792 IPR000048 GO:0005515
Car08g00246 1090 Pfam IQ calmodulin-binding motif 848 867 IPR000048 GO:0005515
Car08g00246 1090 ProSiteProfiles IQ motif profile. 820 849 IPR000048 GO:0005515
Car08g00246 1090 Pfam Myosin head (motor domain) 545 754 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car08g00246 1090 Pfam Myosin head (motor domain) 141 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car08g00246 1090 Pfam Myosin head (motor domain) 93 138 IPR001609 GO:0003774|GO:0005524|GO:0016459
Car08g00246 1090 ProSiteProfiles IQ motif profile. 797 824 IPR000048 GO:0005515
Car08g00246 1090 ProSiteProfiles IQ motif profile. 772 801 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00246 Car-Chr8:1546369 Car11g00596 Car-Chr11:3231929 0 dispersed
Car17g01227 Car-Chr17:9335875 Car08g00246 Car-Chr8:1546369 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00246 K10357 - csv:101220626 1625.91