Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car08g00248 | ATGGCGGCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTCGCTCTCCAACATCAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCTGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA | 549 | 51.55 | MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFCC | 182 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 1580902 | 1581760 | + | Carg05095-RA | Car08g00248 | 152822 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car08g00248 | 182 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 6 | 126 | - | - | |
Car08g00248 | 182 | ProSiteProfiles | LOB domain profile. | 9 | 111 | IPR004883 | - | |
Car08g00248 | 182 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 17-RELATED | 6 | 126 | - | - | |
Car08g00248 | 182 | Pfam | Lateral organ boundaries (LOB) domain | 10 | 107 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car08g00248 | Car-Chr8:1580902 | Car19g00061 | Car-Chr19:528051 | 2.95E-57 | dispersed | |
Car08g00248 | Car-Chr8:1580902 | Car02g01504 | Car-Chr2:9741088 | 6.58E-59 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3943 | PF03195 | LOB | 6.60E-34 | No_clan | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car08g00248 | K13945 | - | csv:101220863 | 297.36 |