Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00248 ATGGCGGCCTCCTCTTCTTCTTCTCCTCCTTGTGGAGCTTGCAAGTTCCTTAGAAGAAAGTGTGTCAATGGCTGCATCTTTGCTCCTTATTTCCGCCACGACCTCGGCGCCTCCCACTTCTCCGCCGTCCACAAAGTTTTCGGTGCAAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCCGTCTCTCACCGGAGCCTAGCCGCCGTCACCATCTCCTACGAAGCTCAAGCACGACTTCAAGATCCGATCTACGGCTGTATCTCCCAGATTTTCGCTCTCCAACATCAGGTTGTGAATCTAAGGGCTCAAGTGGCTTATTTGAGAGAACAAGCAGCTCAAATCATTCTTAACGGCTACATTACAAGAAACCCTAATGAATTACTGTACGGAAACTCTTTGTCTTATTCTGATGAGGAATTGCTGGATCTTCAAACTTGGCTGCTGGAGGAGAGCTGCAGCACCGCCGCACCGGAGTTTGAACCTACGGCGGGGCCGTACGTTCAGATGGGCGTCGCCGATTCTAATCTCGCCGGAGATTTCTGCTGTTAA 549 51.55 MAASSSSSPPCGACKFLRRKCVNGCIFAPYFRHDLGASHFSAVHKVFGASNASKLLAHLPVSHRSLAAVTISYEAQARLQDPIYGCISQIFALQHQVVNLRAQVAYLREQAAQIILNGYITRNPNELLYGNSLSYSDEELLDLQTWLLEESCSTAAPEFEPTAGPYVQMGVADSNLAGDFCC 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1580902 1581760 + Carg05095-RA Car08g00248 152822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00248 182 PANTHER LOB DOMAIN CONTAINING PROTEIN 6 126 - -
Car08g00248 182 ProSiteProfiles LOB domain profile. 9 111 IPR004883 -
Car08g00248 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 6 126 - -
Car08g00248 182 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00248 Car-Chr8:1580902 Car19g00061 Car-Chr19:528051 2.95E-57 dispersed
Car08g00248 Car-Chr8:1580902 Car02g01504 Car-Chr2:9741088 6.58E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3943 PF03195 LOB 6.60E-34 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00248 K13945 - csv:101220863 297.36