Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00254 ATGGATTCGGCGAGGAGTTGGTTTAATAAGCTTCAGCCAAGAGATAGGTTGAGGGGTTCTTCGAAGAGGAGGGAAAATAGTGCTGGAGGGAATGAGGAATCTACTGAACCGGTGGATGAAGAAGAGCTTTCTAATATCACTAAGCAGAAGGTTGCTGCGGCAAAGCAGTACATCGAGAATCATTACAAGGAGCAAAGGAGGAATCTGCAGGAGAGAAGGGAAAGACGCAATATATTGGAAAAGAAGCTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTTAAATTTTTGGAGAAGAAGGAAACAGAATACATGCGCCTCCAAAGGCACAAAATGGGTGTCGATGATTTTGATTTACTAACAATCATTGGCAAAGGTGCTTTTGGGGAGGTTCGTATTTGTAGAGAGAAGACAACAGGTCAGGTATATGCTATGAAAAAGCTTAAAAAATCCGAGATGCTTCGAAGGGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTTCTTGCTGAAGTAGACAGCAATTGCATCGTGAAACTCTATTGTTCTTTTCAAGATGATGAGTTTCTCTACCTTATTATGGAGTACCTACCTGGGGGAGATATGATGACTTTATTGATGAGAAAGGATACATTGACTGATGATGAAGCCAGGTTTTACGTTGGAGAGATAGTTTTGGCTATTGAGTCTATTCATAAGCACAATTACATTCATAGAGATATCAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTTGGACTATGCAAGCCATTAGATTGCAGTACACTCCAAGAACAAGATTTCAATATAGGGAGTGCCCGCAATGGAACTGCACAAAGTGATGAGCGCAATGCAGCTCCTACACGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGCAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTACATTGCTCCAGAGGTTTTGTTGAAGAAAGGTTACGGAATGGAATGTGATTGGTGGTCACTTGGAGCAATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCAACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGAAGTTCCCTGACGAGGCAAAGCTATCTCTCTTGGCAAAAGATCTCATAAGCAAACTACTATGCAATGTTGACCAGAGGCTAGGTACAAACGGTGCGGATGAAATTAAGGTTCATCCGTGGTTTCAAAATCTTGAATGGGATAGGCTATATGAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTACATCATCTAAATCTGGTCCATGGAGAAAGATGCTCTCATCTAAGGACATCAACTTTGTTGGATACACTTATAAGAACTTCGAAATCGTCAACGATTATCAATTGCCTGGGATGACTGAATTGAAGAAAAAATGCAACAAACCAAAAAGACCCTCAATCAAGTCACTCTTTGACGACGAATCGGAGGCACGAGATGCAGCTGATTCATCCATACGTTGTCAACCGAGCGTGGGGGGTAGCTGTTCAAACTCAATGGCATCTGAACTGGATGCATTTGAAAAGAGAAAAGAGTCAATGTGA 1674 41.46 MDSARSWFNKLQPRDRLRGSSKRRENSAGGNEESTEPVDEEELSNITKQKVAAAKQYIENHYKEQRRNLQERRERRNILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRICREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTDDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSTLQEQDFNIGSARNGTAQSDERNAAPTRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSLLAKDLISKLLCNVDQRLGTNGADEIKVHPWFQNLEWDRLYEMEAAFVPEVKDELDTQNFEKFEESDSQSSTSSKSGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMTELKKKCNKPKRPSIKSLFDDESEARDAADSSIRCQPSVGGSCSNSMASELDAFEKRKESM 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1605341 1611269 - Carg05101-RA Car08g00254 152828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00254 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Car08g00254 557 Coils Coil 62 82 - -
Car08g00254 557 MobiDBLite consensus disorder prediction 283 302 - -
Car08g00254 557 Pfam Protein kinase C terminal domain 438 482 IPR017892 GO:0004674|GO:0005524|GO:0006468
Car08g00254 557 ProSiteProfiles Protein kinase domain profile. 120 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00254 557 MobiDBLite consensus disorder prediction 502 543 - -
Car08g00254 557 MobiDBLite consensus disorder prediction 1 46 - -
Car08g00254 557 ProSiteProfiles AGC-kinase C-terminal domain profile. 420 492 IPR000961 GO:0004674|GO:0005524|GO:0006468
Car08g00254 557 MobiDBLite consensus disorder prediction 9 30 - -
Car08g00254 557 Pfam Protein kinase domain 122 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00254 557 MobiDBLite consensus disorder prediction 502 525 - -
Car08g00254 557 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Car08g00254 557 Coils Coil 540 557 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00254 Car-Chr8:1605341 Car17g00140 Car-Chr17:866008 0 dispersed
Car17g01230 Car-Chr17:9367910 Car08g00254 Car-Chr8:1605341 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89039 PF00069 Pkinase 1.80E-62 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00254 K08790 - csv:101221720 986.867