Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00264 ATGATTTTCCTCTTCGATCCGGTTGTGCCGCATAGAGACTTGAAGCCTCAGTGGCGTAAGCCTCTTATGGTACGAAACGATGCAAGTGTCGAGGCCAAGAGACAAATGGGAACAGCCTCTGTACAATGTCTAATTAACAGTATTTCCAGATTCATTCATCTTGTTTCATGCCATACTACAAAGTCTTTGCCTCTTCCTAAGAACTGCAAGAATCTTGCTGTTGTCTTGAAACATCTGAAACTCGTGCTTGATGATGTCGTTAGTCTCAAACTATCCTCCGATGAGTTACTTTATAGAGAATGTGAGTCTCTGGATATCGCTGTTAATGACGCTCGGGAGTTCATTGAAAACTGGTGTCCTAAGATGAGCAAAATTTGCAGCGCTTTGAAATGTGATCCGCTGCTTATAAAGATTCAAAGCTCTTTACAAGAGATTTGTGAGATTGTATGGAAGTTGTCGGAATCAGTATCATGTAGCTCAAGTCTAAATGCTGTTCAGAAATGTCTTGAAGGTCTTCAATCATTGAAGCAGGAAAGGATATCTGAATCTATAGAAGAGGCTTTAATTAGTCAAAGGAGTGGCATTGGTCCGAACTCGGAAGATCTTCTAAAAATTATCGAAGTTCTTCATTTGATGTCGAATCAAGAACTTCTGAAGGAGACTATAGCAGTCGAAAAGGAGAGAATTGATGCTGAACAAAACAATGCGAAAGAGGAACTATATCGGATCAACGAAATTATGGATCTAATTATCCGTATACGAGATTGGATGATTAGAAAGGACTATTTTCATGGGATAAATGGAGTATCAGTTCCTTCATACTTCCGCTGTCCATTGTCGTTGGAACTGATGCTTGATCCAGTAATTGTGGCGTCTGGCCAAACTTATGACAGGTCCTCCATTCAAAAGTGGATAGACAGTGGCCTGAACATCTGCCCCAACACTCATCAGACGCTCACGCATACAAATCTCATTCCCAATTACACTGTTAAAGCCATGATTTTGAGTTGGTGCGATGAAAACAAACTGAATATTTCTAGTTTATCATCGATGGTTCAATTGTCTCAGCAGGATTCAAATCGAAGTGATAGCTCTCGATCATCTCCTGAAGTTGAAAAGGGTTCTAACAAGCGAAATGGGGACGTTTTTACTAGTTTAATTGAGGGAAAATCTAATGAAGGCCAGAGAAACGAAACCAAAAAGTTTGACCACCCTTCCCCTCAGCAGTCATATATCTACAGCAGGAGTGTATCAGCCTCCAGTGCCTTATCTAGCATTGATTATGTTCCCTCGGCACTTAATGAGGTGTTGAAGATATCAACTAAACACGAAATCACATCAGAACATCCTACTGCATCTCATAATGAAGCATCGGGGTTGAATTCATCATTAGAAGGTGGACAATTACAGGCTTGTAAAACAGAGACAGGCATGGTGGAGAATGGAAACTGTAATAGTACAACAGGTAACTTAGTTCCAGTCAAACCTGAATCCGATAACTCGTCGGGGGATTTGCATATCAAGAAATTAGTTGCAGACCTTCAGAGCCAAAAGGATGAAGTTAAAATGAAAGCTGCAGAAGAATTAAGGCTTCTTGCCAAGGATAACGTAGAGAACCGTGTTATAATAGGCCAATGTGGGGCTATAGGCCCCTTACTTTCACTGTTATATTCAGATGGAAAGCAGATACAAGAGCATGCAGTGACAGCTCTCTTAAACCTGTCAATTAATGAAAATAATAAAGTCATGATTGCACAAGGAGGAGCTATAGAACCACTTATTCATGTTTTGAAGACAGGAACATCTACTGCTAAAGAAAATTCTGCAGCAACTTTATTCAGTCTCTCTGTATTGGAAGAATACAAGGCCAAAATCGGTCGATCTGGTGCAGTTAAAGCCTTGGTCAATCTCTTAGGTGAGGGTACACTGAGGGGTAAGAAAGATGCAGCCACTGCTTTGTTCAACTTATCAATTTTTCATGAAAATAAGGCTCGTATAGTTCAAGCAGGAGCAGTTAAGTACCTTGTTGGGCTACTAGCCACTACTACGGGTATGGTTGATAAGGCTGCTGCACTTCTTGCTAATTTGTCGACAATTTCGGAGGGACGATTGGCAATTGCTCGGGAAGGGGGTATACCCTTGTTGGTAGAAATTGTTGAATGTGGATCTATGAGAGGAAAGGAAAATGCTGCATCTATTCTGTTGCAACTATGCCTTCATAGTCCCAAGTTTTGTACCCTGGTTCTCCAAGAAGGAGCCGTTCCACCTCTCGTCGCCCTATCTCAGTCTGGCACACCTAGAGCAAAAGAAAAGGCACAGCAGCTACTCAGCCATTTTCGGAATCAAAGAGATGGAAGCACAGGGAAAGCAAAATCATAG 2379 41.36 MIFLFDPVVPHRDLKPQWRKPLMVRNDASVEAKRQMGTASVQCLINSISRFIHLVSCHTTKSLPLPKNCKNLAVVLKHLKLVLDDVVSLKLSSDELLYRECESLDIAVNDAREFIENWCPKMSKICSALKCDPLLIKIQSSLQEICEIVWKLSESVSCSSSLNAVQKCLEGLQSLKQERISESIEEALISQRSGIGPNSEDLLKIIEVLHLMSNQELLKETIAVEKERIDAEQNNAKEELYRINEIMDLIIRIRDWMIRKDYFHGINGVSVPSYFRCPLSLELMLDPVIVASGQTYDRSSIQKWIDSGLNICPNTHQTLTHTNLIPNYTVKAMILSWCDENKLNISSLSSMVQLSQQDSNRSDSSRSSPEVEKGSNKRNGDVFTSLIEGKSNEGQRNETKKFDHPSPQQSYIYSRSVSASSALSSIDYVPSALNEVLKISTKHEITSEHPTASHNEASGLNSSLEGGQLQACKTETGMVENGNCNSTTGNLVPVKPESDNSSGDLHIKKLVADLQSQKDEVKMKAAEELRLLAKDNVENRVIIGQCGAIGPLLSLLYSDGKQIQEHAVTALLNLSINENNKVMIAQGGAIEPLIHVLKTGTSTAKENSAATLFSLSVLEEYKAKIGRSGAVKALVNLLGEGTLRGKKDAATALFNLSIFHENKARIVQAGAVKYLVGLLATTTGMVDKAAALLANLSTISEGRLAIAREGGIPLLVEIVECGSMRGKENAASILLQLCLHSPKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQRDGSTGKAKS 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1657275 1662683 - Carg05111-RA Car08g00264 152838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00264 792 MobiDBLite consensus disorder prediction 483 497 - -
Car08g00264 792 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 629 671 IPR000225 GO:0005515
Car08g00264 792 MobiDBLite consensus disorder prediction 483 503 - -
Car08g00264 792 Pfam Armadillo/beta-catenin-like repeat 536 575 IPR000225 GO:0005515
Car08g00264 792 Pfam Armadillo/beta-catenin-like repeat 620 657 IPR000225 GO:0005515
Car08g00264 792 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 547 589 IPR000225 GO:0005515
Car08g00264 792 MobiDBLite consensus disorder prediction 354 409 - -
Car08g00264 792 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 670 711 IPR000225 GO:0005515
Car08g00264 792 MobiDBLite consensus disorder prediction 771 792 - -
Car08g00264 792 Coils Coil 214 235 - -
Car08g00264 792 MobiDBLite consensus disorder prediction 378 392 - -
Car08g00264 792 Pfam U-box domain 271 342 IPR003613 GO:0004842|GO:0016567
Car08g00264 792 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00348 Car-Chr2:2520764 Car08g00264 Car-Chr8:1657275 2.40E-63 dispersed
Car08g00264 Car-Chr8:1657275 Car20g00844 Car-Chr20:5912330 1.49E-166 dispersed
Car20g00590 Car-Chr20:3309452 Car08g00264 Car-Chr8:1657275 1.50E-34 dispersed
Car17g01242 Car-Chr17:9438138 Car08g00264 Car-Chr8:1657275 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00264 - - csv:101219353 1199.88