Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00270 ATGTCCCTGGATAACCATCTGTTTGGTTACCAAGAAAATTTTGAAAATTTTCCCGGAAAACAGAATTCCCATCTCTCATTTCACTTCAATTACTTGGAAGAGATGTTGTTTGCCGACATGTCGTTATCGTCATCGTCATCGTCGTCTGATTCGAGCCCTTGTTTGTCTCCGGAGATGCACGTTAAGGAGGAGATAGAAGACGGCGATATCATCGTGCAAGACGCTCAGACACAGAAGGAGGAGAGGGCTTATAGAGGGGTGCGGCGGAGGCCGTGGGGGAAGTACGCAGCCGAGATAAGAGACTCGACTCGACAAGGGGTGAGGGTTTGGTTGGGGACGTTTGATAGTGCGGAGGCTGCAGCATTGGCTTATGACCAAGCCGCATTTTGCATGAGAGGTGCATTAGCCACACTCAATTTTCCGGTGGAGGTTGTTCGAGAGTCGCTCTATGAAATGAAGTATCGGTGGGAAGTCGGGTGTTCGCCTGTCTTGGCGCTCAAACGACGTCACACGATACGGAGGAAGAAGATGGCAGAAGCCGAGAAGATGGAGAAGAAGATGAAGAAGAAGAAAAATGTAGTTGTTTTTGAGGATTTGGGTGTCGAGTACTTAGAAGAACTCTTAAGTTTGACTTCTTAA 639 47.89 MSLDNHLFGYQENFENFPGKQNSHLSFHFNYLEEMLFADMSLSSSSSSSDSSPCLSPEMHVKEEIEDGDIIVQDAQTQKEERAYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGALATLNFPVEVVRESLYEMKYRWEVGCSPVLALKRRHTIRRKKMAEAEKMEKKMKKKKNVVVFEDLGVEYLEELLSLTS 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1688509 1689147 - Carg05117-RA Car08g00270 152844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00270 212 Coils Coil 173 193 - -
Car08g00270 212 Pfam AP2 domain 84 133 IPR001471 GO:0003700|GO:0006355
Car08g00270 212 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car02g01500 Car08g00270 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01142 Car-Chr6:8477035 Car08g00270 Car-Chr8:1688509 1.12E-20 dispersed
Car08g00270 Car-Chr8:1688509 Car19g00066 Car-Chr19:572150 6.05E-59 dispersed
Car17g01253 Car-Chr17:9495205 Car08g00270 Car-Chr8:1688509 8.53E-28 wgd
Car02g01500 Car-Chr2:9715850 Car08g00270 Car-Chr8:1688509 1.18E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3948 PF00847 AP2 9.60E-15 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00270 K14516 - csv:101205053 259.225