Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00287 ATGAGCAAATTGGAATCCAGTTACCATGAGATTCTACTTCTTGACATCGGCAAAGCCGCCCGAAGGAGGTGGAGAATTGCCTTTGCAGTAATATCCTCAATTCGGGCCATGCTTTCCCTAGCAGTGTCAAGAAGAAAAGATCATTGCAGTTTAATCAACTGTGAGATCTTGGAGGAAGGTTCATATGAGGAACAGATAGTCTACACCAAAGATGATCAGAAGAAGCTGATTGAAATGGTAAAGAACAAAAACTTGGAAGCTTACTGTGAGCATGGGAAAGCTCCAGCCATTGCCAAGTCTCTAGGAACAAATCCAGAGAAGGGAATCAAGGATAATGATATTGTTGTGAATGAACGACGTCAAGTATTCGGTTCGAATACTTACCACAAGCGGCCTCCCAAGAGTTTGTTTCATTTTGTGGTGGAAGCTTTCAAGGACACCACCATTGTCATTTTACTTATATGTGCGGCTCTGGCACTTGGGTTTGGAATAAAAGAACATGGAGGACAAGAAGGATGGTATGAAGGCGGGAGCATATTTGTAGCTGTTGCGCTGGTGGTTGTTGTTTCAGCCATCAGCAACTTCAGACAGGAGATTCAATTCGAGAAGTTATCAAAAATAAGTAACAACATCAAAGTGGAGGTAGTGAGAGATGGAAGACGCATAGAAGTTTCCATCTTCAATATAGTGGTTGGAGATGTCGTGGTTCTAAACCTTGGGGACCAAATTCCAGCAGATGGGTTGTTCTTAAGTGGTCATTCATTGCAGGTGGATGAGTCAAGCATGACAGGAGAGAGCGATCATGTGATACTCAATTCAACGGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTTGTAGATGGCTATGGTCAAATGCTGGTGACATCAGTGGGAATGGACACGGCCTGGGGCGAGATGATGAGCTCGATATCTCGGGATTCTGAAGAGCAAACACCACTGCAAGTTCGTCTTAACAAATTGACCACTACTATAGGAAAGGTAGGCCTCTCAGTCGCCTTCATAGTCCTTGTTGTCATGTTGGCGCGCTATTTCACAGGAAACACAACCGATGATTTTGGGAACACAGAGTACAATGGTCGAAAAACAGACGTAGATGATGTGATCAATGCAGTTACCCGTATAGTTGCTGCTGCAATTACCATAGTAGTTGTTGCAATCCCTGAAGGCTTGCCATTGGCTGTTACATTAACACTCGCTTATTCTATGAAGAGAATGATGGCAGATCAGGCAATGGTGAGGGAACTTTCTGCTTGTGAAACGATGGGATCAGCAACTGTGATTTGCACGGACAAAACAGGAACTTTGACATTAAACAAAATGAAAGTTACCAAATTTTGGCTCGGCCAAGAGTTCATTGAGGAAGAAAACCCTTCCCACACCATAGCAGAAACTGTTAGTGAGTTAATAAATCAAGGAGTTGGCTTGAACACAACTGGTAGTGTCTATCAACCTTCTCCAGAATCCGAAATTGAAATCTCTGGTAGTCCAACTGAGAAAGCCATTCTCTCTTGGGCGGTCTCAGAATTCAGTATGGACATGGTAAAGTTGAAAAATGCATATTCCATTCTTCATGTGGAAACCTTCAATTCAGAGAAGAAAAGAAGTGGGGTTTTGGTGAGAAAATTGGCGGATAACACAATCCATCAGCACTGGAAAGGAGCTGCTGAGATGATACTCTCAATGTGTTCTAGTTACATTGAAAGAAATGGGAAAACATATCCCTTAGATAACGAAAGCCGAAGAAAACTTGAGAATATAATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAGACAAATCTCAGAAGAAGAGGAAAAAAATAGCATGCCAACTGCCTCAGACGTGAAAGAAGATGACTATATATTAATGGGAATAGTTGGCATGAAAGACCCATGTAGACAAGGGGTGAAGAAAGCTGTGGAAACATGTAAATCAGCTGGAGTTTCCATTAAAATGATCACAGGTGACAACGTTTTCACAGCAAAAGCTATAGCCACAGAATGTGGAATACTAGATTTCGACCACAACACCGCATGCAGAGGAGAAGTAATAGAAGGTTCTGAATTCCGAAACTACTCAAGTGAAGAAAGACTGCAGAGGGTTGATCAAATCAAGGTGATGGCAAGATCCACTCCATTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTCGTAGCAGTAACCGGAGACGGCACGAACGACGCACCCGCTCTAAAAGAGGCTGACATTGGACTTTCCATGGGCATTGAAGGCACTGAGGTTGCAAAGGAGAGTTCAGACATCGTTATCTTGGATGATAACTTCACTACAGTAGTCACAGTCTTGAGGTGGGGAAGATGTGTATATAACAATATCCAGAAATTCATCCAATTTCAATTGACAGTCAACGTAGCAGCTCTCACAATTAACTTTATAGCAGCAGTATCAGCTGGAGAAGTTCCCTTAACAGCAGTCCAATTGTTGTGGGTGAACCTCATAATGGATACACTGGGTGCTCTTGCACTTGCTACTGAAAGACCAAATGATGAACTAATGCACAAGCCTCCAGTGGGAAGAACAGAACCCCTAATAACAAATATTATGTGGAGGAACCTTCTAGCCCAAGCTTTATATCAAATAGCAATACTCCTAATTTTCCAGTTCCAAGGAAGCAACATCTTCAATGTAAGTGAAATGGTAAACGATACACTAATCTTCAACACTTTTGTCCTCTGCCAAATCTTCAACGAGTTCAACTCAAGGAAACTAGAGAAACAGAACGTCTTTGAAGGCATTCTAAAGAATCATCTATTTCTAGGAATTGTGGGAGTAACGGTTGTTCTACAGGTTATCATGGTAGAATTCCTAAAGAAATTTGCAAATACAGTGAATCTAAATGGCTGGCAGTGGGGACGTTGCATTGCTATTGCAGCTGTTTCTTGGCCTATTGGTTGGATTGTCAAACTCTTGCCCGTTTCTGATAAGCCTTTCCTTAGCTACTTCAAGTGTTTTAAGGGCTGA 3048 42.16 MSKLESSYHEILLLDIGKAARRRWRIAFAVISSIRAMLSLAVSRRKDHCSLINCEILEEGSYEEQIVYTKDDQKKLIEMVKNKNLEAYCEHGKAPAIAKSLGTNPEKGIKDNDIVVNERRQVFGSNTYHKRPPKSLFHFVVEAFKDTTIVILLICAALALGFGIKEHGGQEGWYEGGSIFVAVALVVVVSAISNFRQEIQFEKLSKISNNIKVEVVRDGRRIEVSIFNIVVGDVVVLNLGDQIPADGLFLSGHSLQVDESSMTGESDHVILNSTENPFLLSGTKVVDGYGQMLVTSVGMDTAWGEMMSSISRDSEEQTPLQVRLNKLTTTIGKVGLSVAFIVLVVMLARYFTGNTTDDFGNTEYNGRKTDVDDVINAVTRIVAAAITIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRELSACETMGSATVICTDKTGTLTLNKMKVTKFWLGQEFIEEENPSHTIAETVSELINQGVGLNTTGSVYQPSPESEIEISGSPTEKAILSWAVSEFSMDMVKLKNAYSILHVETFNSEKKRSGVLVRKLADNTIHQHWKGAAEMILSMCSSYIERNGKTYPLDNESRRKLENIIQGMAASSLRCIAFAYRQISEEEEKNSMPTASDVKEDDYILMGIVGMKDPCRQGVKKAVETCKSAGVSIKMITGDNVFTAKAIATECGILDFDHNTACRGEVIEGSEFRNYSSEERLQRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFTTVVTVLRWGRCVYNNIQKFIQFQLTVNVAALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMHKPPVGRTEPLITNIMWRNLLAQALYQIAILLIFQFQGSNIFNVSEMVNDTLIFNTFVLCQIFNEFNSRKLEKQNVFEGILKNHLFLGIVGVTVVLQVIMVEFLKKFANTVNLNGWQWGRCIAIAAVSWPIGWIVKLLPVSDKPFLSYFKCFKG 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1816955 1820282 - Carg25784-RA Car08g00287 152861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00287 1015 Pfam Cation transporting ATPase, C-terminus 829 999 IPR006068 -
Car08g00287 1015 Pfam haloacid dehalogenase-like hydrolase 433 758 - -
Car08g00287 1015 Pfam E1-E2 ATPase 211 413 - -
Car08g00287 1015 ProSitePatterns E1-E2 ATPases phosphorylation site. 437 443 IPR018303 -
Car08g00287 1015 Pfam Cation transporter/ATPase, N-terminus 95 158 IPR004014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00682 Car-Chr5:4528221 Car08g00287 Car-Chr8:1816955 0 dispersed
Car08g00287 Car-Chr8:1816955 Car12g01090 Car-Chr12:10654522 0 dispersed
Car15g00735 Car-Chr15:4100980 Car08g00287 Car-Chr8:1816955 4.22E-102 dispersed
Car19g00672 Car-Chr19:7945807 Car08g00287 Car-Chr8:1816955 1.09E-104 dispersed
Car08g00287 Car-Chr8:1816955 Car12g00873 Car-Chr12:8608357 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00287 K01537 - csv:101220140 1682.92