Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00290 ATGTTTGCTACAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTACTGTCTCTTTAAACTCTCTCCTTCCACCACAAAAGATCAAGAAGAAACGAAGCCTCCCCGGAAACCCAGACCCAGATGCTGAAGTGATAGCACTTTCACCAAGAACACTTCTTGCTACGAACAGATTTGTGTGTGAAATTTGCAACAAAGGGTTCCAAAGGGATCAAAATTTGCAGCTTCATAGGAGAGGCCATAATTTGCCATGGAAATTGAAGCAAAGAAACAGCAAAGAAGTGAAGAAGAAAGCTTATGTTTGTCCTGAGCCATCTTGTGTTCATCATCATCCTTCAAGAGCTTTGGGAGATCTCACGGGAATCAAAAAGCATTATTGTAGAAAACATGGAGAAAAGAAATGGAAATGTGAGAAATGTTCGAAAGTTTATGCTGTTCAATCGGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTCTTCTCAAGGAAGGATAGCTTCATAACCCATAGAGCCTTTTGTGATGCTTTGGCTGAGGAAAGTGCACGGCTTTCAGCTAACCAATTCGTCGTCGCGGCGGAGGTTGAGGCGGCGGCGGAGGGTGGGGCGGCTACCTCCACCGCCTCCGCCTCCGCCCAATCTCTCTTCCCTTTTGGTAGTTTTAATCAATTCTCTAGCTCTTCCCTGTCACGGCCGCCACAAATCTATATGTCGCTTAACCCTTGGGATAATCCCCAAAACCCTAACCCTAATCAAACCCACCAAATTATCAAGCCAGAAGACTCACATTCTCACCATTTTCACCAAATTCCAACTTTGCCCCTCGCCGGCTCCTCCCCAAGCACCGCCACCAACAACCCTTTTGGTATAATTCAAGACCACCACCGCCGCCATCATCCCCACCACCACCAGAAGGCAGGCTCTTCATCCTCCTCTTCCATGATAGCCTCACCGTTTAGGAACCTCCACGTGTCGGTGAATCCTGCCATGTCAGCTCATCTATCAGCCACTGCCTTACTCCAAAAGGCTGCAACAGTTGGGGTTGGAGCTGTGAAATCCAGTCAGCATCAACCCGAGTCAGTGGGCCATATGACTCACTTCAATATGCCTGACATCCCCGAGTTCGCTGCACCAACTCATATGGACTCGCTGACTCATCAACTCGACCCCGACTACGCCACGTGGCAGAAGACAGATAGACTGACCAGGGACTTTCTCGGTTTGACTGGCGATGGGAACGGCGGCGGAGGTGGCAGTGGAGCGATGCAGGTTAGCATGAGTGTCAAAGATATGCTAACGTACGCAGGAGGATTGGAGATTTTTAAACCTCATAATAATAATAATAACAATAATAATAGTAATAATAATAATCATAGTGCTTTTGGTTTTGCGGAGCCAGCTGCCAATGAAACTTGGGACTGCTGA 1452 47.11 MFATTMSNSTSLSEEATVSLNSLLPPQKIKKKRSLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQFVVAAEVEAAAEGGAATSTASASAQSLFPFGSFNQFSSSSLSRPPQIYMSLNPWDNPQNPNPNQTHQIIKPEDSHSHHFHQIPTLPLAGSSPSTATNNPFGIIQDHHRRHHPHHHQKAGSSSSSSMIASPFRNLHVSVNPAMSAHLSATALLQKAATVGVGAVKSSQHQPESVGHMTHFNMPDIPEFAAPTHMDSLTHQLDPDYATWQKTDRLTRDFLGLTGDGNGGGGGSGAMQVSMSVKDMLTYAGGLEIFKPHNNNNNNNNSNNNNHSAFGFAEPAANETWDC 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1858058 1860434 - Carg24903-RA Car08g00290 152864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00290 483 MobiDBLite consensus disorder prediction 253 324 - -
Car08g00290 483 MobiDBLite consensus disorder prediction 283 298 - -
Car08g00290 483 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Car08g00290 483 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00290 Car-Chr8:1858058 Car16g00684 Car-Chr16:4345668 2.95E-108 dispersed
Car17g00674 Car-Chr17:6243622 Car08g00290 Car-Chr8:1858058 1.10E-104 dispersed
Car07g00606 Car-Chr7:3065072 Car08g00290 Car-Chr8:1858058 8.61E-107 transposed
Car11g01486 Car-Chr11:11999270 Car08g00290 Car-Chr8:1858058 3.45E-86 transposed
Car17g01137 Car-Chr17:8724763 Car08g00290 Car-Chr8:1858058 2.05E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3952 None None None None Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00290 K25870 - csv:101208253 640.188