Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00293 ATGGCGGGTGCAGCCACAGTGGTGTGCTTACAGCAGCTGAAAGGCATCCTTGGGCTAACCCATTTCACTCACGCGACTGATCTCGTCTCGGTTCTCCGCTCCGTTTTTAGTCAAGTCGATCAGTGGAGATGGGAAAGTGGAGTATTGGGATGTTGTTTTCTCTTCTTCCTGCTCGTCACCAGATATTTTAGCAAGAAAAAGCCGAAATTCTTTTGGATATCAGCAATGGCACCTTTGACGTCGGTAATTTTGGGAAGTCTTCTAGTGTTTCTCACTCATGCAGAAAAACACGGCGTTGAAGTGATCGGTGAATTGAAGAAAGGGCTAAATCCAGTGTCGATTACCGATTTAGTGATGGTGTCGCCTCATCTTTCCATCGCTATCAAAACTGGCATCATCACGGGTGTCATTGCTCTCGCGGAAATGGTAGCGATTGGCACCATGAACATGGTCGGATCTTGCTTCTCTTGCTATCTCACCACTGGCCCGTTTTCCCGATCGGCCGTGAATTTCAATGCAGGATGCAAAACCGCGGTTTCCAACGTGGTAATGGCCATTGCTGTGATGTTGACGCTGCTGTTTTTGACTCCTCTGTTTCATTACACGCCTCTGGTCGTGCTTTCTTCCATTATCATTTCCGCCATGCTTGGTCTCATCGATTACGACGCCGCTATTCACTTGTGGAAAGTCGATAAGTTCGATTTCCTTGTCTGTATTGGTGCTTATGCTGGTGTCGTCTTTGCCAGTGTTGAAATTGGCTTGGTCATTGCGTGTCCTACAACAACCCATTACTACTCACTTTTAGCTACATTTGTTATGACTATTGACAACATTGGGGACTACTTGTTGCAGGTGGCTATATCGCTGCTCAGACTACTTTTGTTCGTCGCAAGGCCGAGGACGCTTGTGCTCGGAAACCTTCCTAATTCCACTGTTTACAGGAATGTCGAGCAATACCCGAATGCTGGGAATGTTCCTGGCATTCTCATACTCGAGATCGACGCTCCCATTTACTTTGCTAATTCCAGCTACTTGCGAGAAAGGATTATAAGGTGGGTTGATGAAGAGGAAGACAGGATAAAGGCTTCAGGAGATAGTACCTTACAATATGTCGTATTAGACATGAGTGCTGTTGGAAACATTGATACGAGTGGAATAAGCATGTTTGAAGAGATCAAGAAGATTTTAGACAGAAGGGGGTTGAAGAAGCTGGACAAGGGGAAGTTCATTGAGAGCCTGGGACACGAATGGATCTATCTTACGGTGGCTGAAGCTGTAGCAGCCTGCAACTATATGCTTCACTCTTGCAAACCAAACCCTGAAACTGATGAGAAAACAGAAGCATGGAACAGTGTGTAA 1359 46.06 MAGAATVVCLQQLKGILGLTHFTHATDLVSVLRSVFSQVDQWRWESGVLGCCFLFFLLVTRYFSKKKPKFFWISAMAPLTSVILGSLLVFLTHAEKHGVEVIGELKKGLNPVSITDLVMVSPHLSIAIKTGIITGVIALAEMVAIGTMNMVGSCFSCYLTTGPFSRSAVNFNAGCKTAVSNVVMAIAVMLTLLFLTPLFHYTPLVVLSSIIISAMLGLIDYDAAIHLWKVDKFDFLVCIGAYAGVVFASVEIGLVIACPTTTHYYSLLATFVMTIDNIGDYLLQVAISLLRLLLFVARPRTLVLGNLPNSTVYRNVEQYPNAGNVPGILILEIDAPIYFANSSYLRERIIRWVDEEEDRIKASGDSTLQYVVLDMSAVGNIDTSGISMFEEIKKILDRRGLKKLDKGKFIESLGHEWIYLTVAEAVAACNYMLHSCKPNPETDEKTEAWNSV 452
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1878233 1882030 + Carg24900-RA Car08g00293 152867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00293 452 Pfam STAS domain 319 403 IPR002645 -
Car08g00293 452 Pfam Sulfate permease family 1 239 IPR011547 GO:0016021
Car08g00293 452 ProSiteProfiles STAS domain profile. 318 402 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00293 Car-Chr8:1878233 Car06g01192 Car-Chr6:8732347 0 dispersed
Car08g00293 Car-Chr8:1878233 Car17g01133 Car-Chr17:8699382 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00293 K17471 - csv:101222260 751.125