Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00323 ATGCTTCCGTGGGGAGGTCTTAGTTGCTGTTTGAGTGCAGCTGCTCTCTATCTTCTTGGAAGGAGTAGTGGCCGGGATGCGGAGTTACTGAAATCTGTTACGAGGGTCGATCAGTTGAAGGAACTGGCTCAATTGCTTGAGGCTGAATGTGTAGTACCTCTGGTTGTTGCAATTTCTGGGAGAGTAAGCTCTGATACACCAATAAATTGCGAGTTTAGTGGGCTGCGGGGAGTAATTGTGGAGGAAACGGCAGAACAACACTTTCTGAAGCACAACGATGCAGGATCATGGATTCAGGATTCTGCACTGATGCTCTCCATGAGCAAAGAAGTTCCTTGGTATCTGGATGATGGGACTGGTCGTGCATTTGTGGTCGGAGCTCGAAGTGCCACAAATTTTATATTACCAGTAGTGAGTGAGATATTTGAAGAGTCTGGCAGATCTCTTATGCGTGGAACCTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATAGAGCGTGTACTACCAACTGGCACTTCCTTGACTGTCGTTGGTGAGGCTGCCAAAGATGACATTGGTACGATTAGAATACAACGACCACACAAAGGGCCATTTTATGTCTCCCCAAAAACAATCGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCCCTGGGTTTGAGCATATTTGGTTTGTATCTCGTCACAAAGCATGCTATTCTTTATCTCTTGGGGAGAAGGCGTCGCTGGAAATATCAGAAAAGGGTCCTAGCTGCAGCTGCCAAGAGATCAAACCAAGAAAATGAAGGGGAAAATGTTACGACTAACAATGGCTCAGATGGTACGAAGAGAGACCGTTCAATGCCAGATCTTTGTGTAATATGTCTTGAGAGAGACTACAACGCCGTTTTTGTCCCGTGCGGCCATATGTGCTGCTGTGTAGCGTGTTGTTCACATTTAACAAACTGTCCACTCTGTCGTCGACGAATTGAGCTGGTAGTAAAGACATACCGCCATTGA 1029 45.97 MLPWGGLSCCLSAAALYLLGRSSGRDAELLKSVTRVDQLKELAQLLEAECVVPLVVAISGRVSSDTPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVVGARSATNFILPVVSEIFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLISNLGKWARWYKYASLGLSIFGLYLVTKHAILYLLGRRRRWKYQKRVLAAAAKRSNQENEGENVTTNNGSDGTKRDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSHLTNCPLCRRRIELVVKTYRH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2075400 2083697 + Carg22187-RA Car08g00323 152897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00323 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 335 - -
Car08g00323 342 Pfam E3 Ubiquitin ligase 86 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
Car08g00323 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00323 Car-Chr8:2075400 Car17g00651 Car-Chr17:6070831 6.54E-15 dispersed
Car14g01494 Car-Chr14:12386132 Car08g00323 Car-Chr8:2075400 2.41E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00323 K15688 - csv:101218196 631.328