Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00363 ATGGCTACCTCCATTAAAGTCCACGGAGTCCCCTTTTCCGGACCCACATGCAGGGTTCTAGCTTGTCTCTACGAGAAAGAACTTGAATACGAGTTCGTCAAACTCAAGATGCACGAAGGGGAACACAAGAAACAGCCATTTCTCTCCATCAATCCGTTTGGTCAAGTTCCTGGGTTCCAAGATGGAGATTTGACGCTTTTTGGTAAAATTTATTTAGGAAACAGAGCAATTCATGAATCCAGGGCAATCACGCAGTATATCGTAGGGAATTATGCTAATAATGGAACCCAATTGATTTTCCAAGACCCCAAGAAAGCGGCGATCGTATTGACATGGATTGAAGTGGAGAGCCACCATTATGATCCACCAGCCTCGAAGCTGGTCCTCGAGCTCTGCTTGAAGCCTTTGCTTGGTTGGGGCGAGACAGATGCTGCAGTAGTTGAGCAAAGTGAAGCTGAGCTAGCTAAAGTTCTTGATATCTATGAGGATAGGCTGGCTCAGTCCAAATACTTGGGAGGTGAGTCCTTCACTTTAGCTGATTTGCACCATCTCCCAACCATAGACTACTTATTTGGGACACAGATGAAGAAACTGTTTGAATCTCGGCCCCATGTCAATGCATGGGCGGCTGATATCATGGCCAGGCCTGCGTGGGCTAAGGTGCTTGCTTTGCGCTAA 678 46.9 MATSIKVHGVPFSGPTCRVLACLYEKELEYEFVKLKMHEGEHKKQPFLSINPFGQVPGFQDGDLTLFGKIYLGNRAIHESRAITQYIVGNYANNGTQLIFQDPKKAAIVLTWIEVESHHYDPPASKLVLELCLKPLLGWGETDAAVVEQSEAELAKVLDIYEDRLAQSKYLGGESFTLADLHHLPTIDYLFGTQMKKLFESRPHVNAWAADIMARPAWAKVLALR 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2343399 2344618 - Carg22146-RA Car08g00363 152937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00363 225 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 102 225 IPR010987 -
Car08g00363 225 Pfam Glutathione S-transferase, N-terminal domain 7 88 IPR004045 -
Car08g00363 225 Pfam Glutathione S-transferase, C-terminal domain 125 216 IPR004046 -
Car08g00363 225 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 95 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00363 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101212536 335.109
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g00363 Car17g01048 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00363 Car-Chr8:2343399 Car17g01048 Car-Chr17:8193561 6.11E-115 dispersed
Car08g00362 Car-Chr8:2341432 Car08g00363 Car-Chr8:2343399 1.39E-104 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g261 . . . . . Bpe06g00515 . . Cmo08g00404 Cmo17g01082 . . . . Sed11g1742 . . Bhi09g00857 Tan06g0840 Cmetu06g1890 . . . . . . . . . . . . Cone20ag0934 . . Lsi02g02381 Csa07g01817 . Cme01g02339 . . . . . . . . . . . Cma08g00410 Cma17g01106 Car08g00363 Car17g01048 . Cpe12g00950 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g01048 CST 1 209 Glutathione S-transferase Gene Family AT4G02520 59.4 3.3e-65 245.4
Car08g00362 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 2.2e-64 242.7
Car08g00363 CST 5 221 Glutathione S-transferase Gene Family AT4G02520 54.5 8.8e-58 220.7
Car17g01048 CST 1 210 Glutathione S-transferase Gene Family AT2G02930 60.6 1.0e-66 250.4
Car08g00362 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.7 7.5e-65 244.2
Car08g00363 CST 5 222 Glutathione S-transferase Gene Family AT2G02930 55.2 6.8e-58 221.1
Car08g00362 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 7.9e-61 231.1
Car17g01048 CST 3 206 Glutathione S-transferase Gene Family AT1G02950 55.1 1.3e-58 223.8
Car08g00363 CST 6 218 Glutathione S-transferase Gene Family AT1G02950 51.9 1.7e-55 213.4
Car08g00362 . 1 210 Glutathione S-transferase Gene Family AT1G02930 58.6 2.5e-65 245.7
Car17g01048 CST 1 210 Glutathione S-transferase Gene Family AT1G02930 59.0 4.3e-65 245.0
Car08g00363 CST 5 222 Glutathione S-transferase Gene Family AT1G02930 53.2 1.5e-57 219.9
Car17g01048 CST 1 210 Glutathione S-transferase Gene Family AT1G02920 60.5 1.8e-66 249.6
Car08g00362 . 1 210 Glutathione S-transferase Gene Family AT1G02920 58.6 6.7e-66 247.7
Car08g00363 CST 5 222 Glutathione S-transferase Gene Family AT1G02920 54.6 6.0e-59 224.6
Car08g00362 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 1.6e-69 260.0
Car17g01048 CST 1 214 Glutathione S-transferase Gene Family AT2G47730 57.7 5.4e-65 245.0
Car08g00363 CST 4 225 Glutathione S-transferase Gene Family AT2G47730 53.4 2.6e-59 226.1
Car14g01764 CST 47 202 Glutathione S-transferase Gene Family AT1G17180 51.6 1.1e-39 160.6
Car02g00463 . 50 220 Glutathione S-transferase Gene Family AT2G02390 67.3 3.1e-62 235.3
Car02g00464 . 51 221 Glutathione S-transferase Gene Family AT2G02390 65.5 7.7e-61 230.7
Car06g00974 . 60 226 Glutathione S-transferase Gene Family AT2G02390 53.9 2.6e-48 189.1
Car02g00464 . 10 220 Glutathione S-transferase Gene Family AT2G02380 62.1 1.6e-73 273.1
Car02g00463 . 9 218 Glutathione S-transferase Gene Family AT2G02380 62.4 7.8e-73 270.8
Car06g00974 . 17 225 Glutathione S-transferase Gene Family AT2G02380 55.0 1.6e-62 236.5
Car04g00676 . 1 229 Glutathione S-transferase Gene Family AT5G41210 69.4 2.9e-89 325.5
Car16g00531 . 1 256 Glutathione S-transferase Gene Family AT5G41210 63.7 8.6e-89 323.9
Car16g00531 . 1 256 Glutathione S-transferase Gene Family AT5G41240 62.5 9.6e-86 315.1
Car04g00676 . 1 229 Glutathione S-transferase Gene Family AT5G41240 67.7 6.2e-85 312.4
Car06g00291 . 4 232 Glutathione S-transferase Gene Family AT5G02780 67.5 2.3e-83 305.8
Car06g00290 . 10 249 Glutathione S-transferase Gene Family AT5G02780 57.3 2.8e-68 255.8
Car06g00291 . 3 230 Glutathione S-transferase Gene Family AT3G55040 56.8 2.9e-75 279.3
Car06g00290 . 5 249 Glutathione S-transferase Gene Family AT3G55040 51.0 1.5e-60 230.3
Car06g00291 . 4 232 Glutathione S-transferase Gene Family AT5G02790 69.1 3.0e-91 332.0
Car06g00290 . 10 251 Glutathione S-transferase Gene Family AT5G02790 55.8 2.5e-69 259.2
Car04g00219 . 284 492 Glutathione S-transferase Gene Family AT1G19570 68.1 8.2e-80 293.9
Car04g01111 . 1 211 Glutathione S-transferase Gene Family AT1G19570 65.1 1.6e-78 289.7
Car14g00753 . 67 275 Glutathione S-transferase Gene Family AT1G19570 61.4 6.8e-74 274.2
Car04g00219 . 284 493 Glutathione S-transferase Gene Family AT1G75270 72.0 2.4e-87 318.9
Car04g01111 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.9 1.6e-86 316.2
Car14g00753 . 67 275 Glutathione S-transferase Gene Family AT1G75270 63.3 2.1e-75 279.3
Car04g00218 . 1 165 Glutathione S-transferase Gene Family AT1G75270 50.7 3.3e-52 202.2
Car14g00753 . 56 277 Glutathione S-transferase Gene Family AT5G16710 76.6 3.0e-100 362.1
Car04g00219 . 284 491 Glutathione S-transferase Gene Family AT5G16710 59.1 7.7e-72 267.7
Car04g01111 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 1.1e-70 263.8
Car09g00677 . 1 267 Glutathione S-transferase Gene Family AT1G77290 68.5 1.7e-106 382.9
Car04g01134 . 1 324 Glutathione S-transferase Gene Family AT1G77290 56.8 2.6e-99 359.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000808 1 3 1 2 2 3 3 3 3 3 2 3 3 3 3 3 3 7 3 3 3 3 2 2 6 3 3 5 5 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g00363 Car_Chr08 FPKM 10.481642 10.248369 17.114384 15.825412 20.253277 21.135878 21.657764 21.386776 20.713217 18.96452