Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00380 TTTGCCGCCAAATCCTTAGACCTCCCAGTCGCATCCTTAGAATCACCATTTCCGTCTCCCCGCTTCTCCGAAATGTCAGCCATGAAAGATACCGGAGCTCTGGACTTCACCGCCGACAGAGTGCTCGCTAAGGAGTTCATCGCGAACTTCGCCGACGCCAATGGCGACGCGAAGTATTTAAACATTCTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAATTCAAATCGATCTCGAGGATGTCTTTAATTATAAGGACTTGGACGAGGATTTCCTCAGACGTATTACAGAGAACACTCGACGATATATTGGAATTTTTGCCGATGCGATTGATGAGCTCATGCCGGAGCCAACAGAGGCGTTTATAGATGATGATCATGACATATTAATGACTCAAAGGTCCGATGATGGACCGGATACTGCCGATAACCCTGACCCACGCCAAAAAATGCCTCCAGAAATTAAACGTTATTTTGAAGTTTACATTAGAGCATCTTCAAAGGGTCGTCCATTTACCATAAGAGAGGTCAAAGCTTCATATATTGGTCAACTTGTGTGGATATCTGGTATTGTGACGCGCTGTTCAGATGTAAAGCCATTGATGCAGGTGGCTGTTTATACATGCGAAGACTGTGGTTTCGAGATATATCAGGAGGTAACAGCTCGAGTCTTCATGCCTTTATTTGAGTGTCCATCTCAGCGTTGTAGAACAAACCAAACGAAAGGCAACCTAATTCTTCAACTTAGAGCATCCAAATTTCTGAAGTTTCAGGAGGCCAAAATTCAAGAGTTAGCTGAGCATGTTCCAAAAGGTCATATTCCCCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCTCCAGGTGATGTTGTCGAACTATCAGGGATTTTTCTTCCTATTCCCTATACGGGTTTCAGGGCAATGCGTGCTGGTTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATATGAGGAATATGAACTTAGAGGAGATGAGGAGGAACTAATTGCACGTTTGGCCGAGGATGGTGATATTTACAATAAACTTTCAAGGTCGTTGGCACCTGAAATTTTTGGGCATGAAGATATTAAGAAAGCTTTACTGCTTCTCCTTGTGGGTGCTCCTCATAGAAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTGATGGGTGATCCTGGAGTTGCGAAGAGTCAACTTCTTAAGCACATCATCAATGTTGCTCCCAGGGGTGTCTACACGACTGGCAAAGGTAGCAGTGGGGTTGGTCTAACGGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGGGCATTGGTATTAGCTGATATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAATCTGATCGTACAGCAATACATGAAGTCATGGAGCAACAGACTGTGAGCATTGCCAAGGCTGGGATCACCACTTCTCTTAATGCCAGGACTGCTGTCCTTGCTGCAGCCAATCCAGCATGGGGAAGATACGACCTACGTAGAACTCCAGCTGAAAACATTAACCTTCCTCCAGCTCTATTATCAAGATTTGATCTTCTTTGGTTGATCCTAGATCGAGCTGATATGGATAACGATCTTGAAATGGCTAGACATGTTGTTTATGTCCATCAGAATAGAGAATCTCCTGCCCTTGGCTTCACCCCACTTGAATCATCTGTTCTTCGAGCTTATATTTCAGCTGCGAGGAGATTGTCTCCTTACGTTCCCAAGGATCTAGAGGAGTATATTGCCAGTGCCTATTCCAGTATTCGTCAGGAAGAAGCTAAATCTAACACTCCACATTCATATACCACAGTCCGAACTCTACTAAGCATTCTCCGGATATCAGCTGCTCTAGCAAGGCTTAGATTCTCTGAGACTGTGGTTCAGAGCGATGTCGATGAGGCTCTACGGTTAATGCAAATGTCAAAATTTTCTCTATACTCGGATGACCGTCAAAAATCCGGTCTAGATGCTATCTCAGATATCTATTCAATCCTGCGTGATGAAGCTGCCAGAACGAATAAAATGGATGTGAGCTATGCACACGCCCTTAACTGGATATCTAGGAAGGGATACAGTGAAGCTCAGCTAAAAGAATGTTTGGAGGAGTACGCAGCCTTGAATGTGTGGCAAATTCATCCACACACCTTCGACATTCGGTTTATAGATGCCTGA 2247 44.19 FAAKSLDLPVASLESPFPSPRFSEMSAMKDTGALDFTADRVLAKEFIANFADANGDAKYLNILQEVANRRVRAIQIDLEDVFNYKDLDEDFLRRITENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTADNPDPRQKMPPEIKRYFEVYIRASSKGRPFTIREVKASYIGQLVWISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKIQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEEYELRGDEEELIARLAEDGDIYNKLSRSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQNRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSNTPHSYTTVRTLLSILRISAALARLRFSETVVQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEAARTNKMDVSYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2458315 2464523 + Carg13383-RA Car08g00380 152954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00380 748 Pfam MCM N-terminal domain 44 162 IPR027925 -
Car08g00380 748 Pfam MCM AAA-lid domain 583 666 IPR041562 -
Car08g00380 748 ProSitePatterns MCM family signature. 465 473 IPR018525 GO:0003677|GO:0005524|GO:0006260
Car08g00380 748 Pfam MCM P-loop domain 344 566 IPR001208 GO:0003677|GO:0005524|GO:0032508
Car08g00380 748 MobiDBLite consensus disorder prediction 132 151 - -
Car08g00380 748 CDD AAA 387 542 - -
Car08g00380 748 Pfam MCM OB domain 173 303 IPR033762 -
Car08g00380 748 ProSiteProfiles MCM family domain profile. 356 562 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00380 Car-Chr8:2458315 Car14g00959 Car-Chr14:5910123 5.45E-102 dispersed
Car07g00005 Car-Chr7:45880 Car08g00380 Car-Chr8:2458315 5.31E-111 transposed
Car17g00984 Car-Chr17:7900030 Car08g00380 Car-Chr8:2458315 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00380 K02210 - csv:101219064 1388.63