Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00406 ATGGGATGTTTTGGTTGCTGCAAAGAAGATGCTATCCAGATGGCTGCTGATAACAGCAGCATGTACCCGGTAAAAGCTTCAGCAGGAAGTGATGAACGCTACAAGCAGCAAACTGCACCTAAGAGTCCTGTGAAAATGCGACCAATTGAAGTCCCTGCCATATCATTTCAGGAACTAAAGGCAATTACGAAAAATTTTGATGCTCAATGTTTGATTGGAGAGGGTTCATACGGAAGAGTATACTATGGGGTGTTTACAAATGGGCAGACTGTGGCAGTCAAAAACTTGGATGCCAGCAAACAACCTGATGATGAATTCTTATCCCAGGTTTCCATGGCTTCAAGACTAAAGCACGACAATTTTCTAAATTTAGTTGGATACTGTGTGGATGGCAATAATCGAATCCTTGCATACGAGTATGCTTCAAATGGATCTCTTCACGACATTTTACACGGGAGGAAAGGAGTCAAAGGAGCAGAACCTGGCCCTGTTCTTTCCTGGACAGAAAGAGTAAAAATTGCTGTAGGTGCTGCAAGGGGGTTGGAGTATTTACATGAAAAGGCTGATCCCCGTATCACCCATCGAGACATAAAATCCAGCAATGTTTTAATATTTGATGATTATTTGGCGAAGATTGCCGACTTTGATTTGTCAAACCAAGCCCCTGATATGGCTGCACGCCTTCATTCCACTCGTGTTCTTGGAACCTTTGGTTATCATGCTCCTGAATACGCAATGACTGGACACTTGAATGCCAAGAGTGATGTGTACAGCTTTGGTGTCATCCTGCTTGAACTTTTGACAGGAAGAAAGCCTGTTGATCACACATTGCCTCGAGGACAGCAAAGCCTTGTAACATGGGCCACGCCCAAACTTTGCGAGGACAAAGTTAATCAATGTGTTGACGCAAAACTACGAGATGAGTACCCTCCCAAGTCAGTTGCAAAGTTTGCAGCCGTTACTGCATTATGCATTCAATATGAAGCAGATTTCAGGCCAAACATGAGTGTAGTGGTCAAAGCACTGCAGCCTCTGTTAAATCCCCGACCTGGTCCTGGTGGAGAGCGCCAAAACTCTAAACAGTAA 1086 44.2 MGCFGCCKEDAIQMAADNSSMYPVKASAGSDERYKQQTAPKSPVKMRPIEVPAISFQELKAITKNFDAQCLIGEGSYGRVYYGVFTNGQTVAVKNLDASKQPDDEFLSQVSMASRLKHDNFLNLVGYCVDGNNRILAYEYASNGSLHDILHGRKGVKGAEPGPVLSWTERVKIAVGAARGLEYLHEKADPRITHRDIKSSNVLIFDDYLAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGHLNAKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLCEDKVNQCVDAKLRDEYPPKSVAKFAAVTALCIQYEADFRPNMSVVVKALQPLLNPRPGPGGERQNSKQ 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2617538 2621075 + Carg13409-RA Car08g00406 152980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00406 361 Pfam Protein tyrosine and serine/threonine kinase 71 342 IPR001245 GO:0004672|GO:0006468
Car08g00406 361 ProSitePatterns Protein kinases ATP-binding region signature. 72 94 IPR017441 GO:0005524
Car08g00406 361 ProSiteProfiles Protein kinase domain profile. 66 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00406 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00406 Car-Chr8:2617538 Car14g01325 Car-Chr14:11207128 8.05E-170 dispersed
Car01g00235 Car-Chr1:1299989 Car08g00406 Car-Chr8:2617538 2.45E-27 wgd
Car14g00873 Car-Chr14:5159412 Car08g00406 Car-Chr8:2617538 4.15E-66 wgd
Car17g00948 Car-Chr17:7725705 Car08g00406 Car-Chr8:2617538 3.68E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89042 PF07714 PK_Tyr_Ser-Thr 2.50E-44 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00406 K13436 - csv:101215263 634.024