Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00444 ATGACAGACCCTAATTACTCCACCTTCTTCTCTCCCAATTCCTTCACCTTCATCCCTCTCCCACCCTCTCCTCCGCCACTCTCTCCGCCGCAAGCCCTCCCTCTCATCAACACTCTCTCTCTGGAAACCACCGATCAACCTTCCTCCAGCACCACCAACAACCACCAAAACGCCCTCACCCTTGACTTCTGCCTCTCTTGCCCTACCTCCGATCTCGACCTCTCCACCTCCTTCCCGCCGGACCCCACCGGAAAAACCCACCACGACGACCTCTCCCCCCTCCCTTCCCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCAACCCCATCTCAGATCCTCTTCGGTCCTTCTCAGTTCTCCTGCCATCTTTGCTCTAAAGCCTTCAATCGATACAATAATCTTCAGATGCATATGTGGGGGCATGGTTCTCAATACAGGAAAGGACCAGAGTCCCTAAAAGGAACACAGCCGACCGCCATGCTACGCTTGCCATGCTACTGCTGCGCGCCCGGGTGCAAACACAACATCGACAACCCGACGTCGCGACCGCTCAAGGACTTTCGCACGCTCCAAACACATTACAAACGTAAGCATGGAATCAAGCCTTTTAGTTGTAGAAAATGTAGCAAAGCGTTTGCTGTAAAAGGCGATTGGCGAACGCATGAGAAGAATTGTGGGAAGATTTGGTATTGTTTTTGTGGCTCTGACTTTAAACATAAGCGCTCGCTTAAAGATCATATCAAAGCCTTTGGACAAGGTCATGGCTCGTTGGGTCTTGATTATTTTGACGACGATAACGAACATGCATCGGAAGTTGAACAAGATGGCAACGTTGTTCACTAA 843 51.13 MTDPNYSTFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHQNALTLDFCLSCPTSDLDLSTSFPPDPTGKTHHDDLSPLPSPISGKGQFWIPTPSQILFGPSQFSCHLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAPGCKHNIDNPTSRPLKDFRTLQTHYKRKHGIKPFSCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGQGHGSLGLDYFDDDNEHASEVEQDGNVVH 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2896094 2897487 + Carg13447-RA Car08g00444 153018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00444 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Car08g00444 280 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Car08g00444 280 Pfam Zinc finger, C2H2 type 119 138 IPR013087 -
Car08g00444 280 MobiDBLite consensus disorder prediction 75 94 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00444 Car17g00906 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00444 Car-Chr8:2896094 Car14g00406 Car-Chr14:2050856 2.62E-100 dispersed
Car17g00906 Car-Chr17:7471048 Car08g00444 Car-Chr8:2896094 4.14E-149 wgd
Car02g01028 Car-Chr2:7194320 Car08g00444 Car-Chr8:2896094 8.89E-112 wgd
Car20g00061 Car-Chr20:336849 Car08g00444 Car-Chr8:2896094 7.15E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3959 PF00096 zf-C2H2 0.002 CL0361 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00444 - - csv:101209911 449.129