Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00467 ATGGAGCTTGGCTTGAGCTTAGGCGACACTCCCAAGCCCTTTCGTTTCGTCGACAAGCAACGGCAACCTCAGCGCGGCCTTTCCCGTCCAGATTTAGGGTTCTGCGTCGACTTATCGATCGGCCGTACTATCGCCGGAGATAAAGAAGGCGACGAAGAAAAACCTAATCAGAGAGAAGAGGAATCCGATGGCAATGAAGATCCACCGATCCAACTCGATCTTCTCCCTCGCAATCCTGTTCAACGGAACCTAACGAATCCTTACCAAGGATTTCCATGGCCGTCGTCTGAAAACGACGAAGTTGAAGACCGATCCGCATCGCCGAATAGCGCAGCGTCGTCGTTTCAAATGGAATTTGGATTGTACGGCGGCGGAGGGAACATTTCTTCACGGATAGATCAAATGAAAAATAGCGTTGTAAACGAAGTAGGTGAATCTGAGCGAGCATCTTCACGAGCGAGCGATGAAGACGAAAATGGCTCCACGAGGAAGAAACTCAGATTGTCGAAAGACCAATCCGCTTACCTCGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCAAAACAAAAACTGGCGCTGGCTAAGCAACTGAATCTTCGTCCGCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGAGCCAGGACAAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAAAGATGCTGCGAGACATTAACAGATGAGAACAGACGGCTACAAAAGGAGCTTCAAGAATTAAGAGCTCTGAAGACCACTAACTCATTCTACATGCAATTACCAGCCACCACACTCACCATGTGCCCATCATGTGAAAGAGTGACCTCCACCGTCGCCACAGCCATCGCCGGCGGAGGAAAACTACCTGGTTTCGCCATTTCTGGTGGAGCAAGCTCCTCCTCTTTCCCATTTTCTGCAAAAACACAGACCCACCAGTCAACAACTTCATGA 957 48.69 MELGLSLGDTPKPFRFVDKQRQPQRGLSRPDLGFCVDLSIGRTIAGDKEGDEEKPNQREEESDGNEDPPIQLDLLPRNPVQRNLTNPYQGFPWPSSENDEVEDRSASPNSAASSFQMEFGLYGGGGNISSRIDQMKNSVVNEVGESERASSRASDEDENGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTDENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSTVATAIAGGGKLPGFAISGGASSSSFPFSAKTQTHQSTTS 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2988310 2989609 - Carg13470-RA Car08g00467 153041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00467 318 MobiDBLite consensus disorder prediction 44 65 - -
Car08g00467 318 ProSitePatterns 'Homeobox' domain signature. 194 217 IPR017970 GO:0000981|GO:0006355
Car08g00467 318 MobiDBLite consensus disorder prediction 78 93 - -
Car08g00467 318 MobiDBLite consensus disorder prediction 1 111 - -
Car08g00467 318 Pfam Homeobox associated leucine zipper 219 253 IPR003106 GO:0006355|GO:0043565
Car08g00467 318 Pfam Homeodomain 163 217 IPR001356 GO:0003677
Car08g00467 318 ProSiteProfiles 'Homeobox' domain profile. 159 219 IPR001356 GO:0003677
Car08g00467 318 MobiDBLite consensus disorder prediction 148 168 - -
Car08g00467 318 Coils Coil 232 255 - -
Car08g00467 318 MobiDBLite consensus disorder prediction 141 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00089 Car-Chr6:617525 Car08g00467 Car-Chr8:2988310 6.29E-88 dispersed
Car08g00467 Car-Chr8:2988310 Car14g00376 Car-Chr14:1884739 4.80E-95 dispersed
Car01g00185 Car-Chr1:1013013 Car08g00467 Car-Chr8:2988310 1.60E-65 wgd
Car17g00882 Car-Chr17:7382958 Car08g00467 Car-Chr8:2988310 4.43E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3963 PF00046 Homeodomain 1.80E-15 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00467 K09338 - csv:101221600 505.368