Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00489 ATGGAAGGCCAATCAAGAGAAGAGTATATTAGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGTGTTTCGAAGTACAGAGGAGTAGCAAGGCACCATCATAATGGGAGATGGGAAGCTCGAATTGGCAGAGTGTTCGGCAACAAATATCTTTACCTTGGAACATACGCTACGCAAGAAGAAGCTGCTAGAGCTTACGACCTGGCGGCAATAGAACATCGTGGCCTTAACGCCGTTACAAATTTCGATATCAGCCGTTACATCAAATGTCTCCGTCCAGGGGAACAGCATATCCCAGACAATAACCGTCCATCAAGTCCAAACGCCGGCGACACTGCCTCAGAATTTGACCCCAAATCCTTTCTCGAAATTACCTTTCCGTCGCAATCTTCGAGCTCCGACCAACCAACCACCGCGCCGGAATCTCACGGCGGCCACCCCTCATCATCGTCGGCGACGTTGGAGCTGCTATTCCATTCGTCAAAATTCAAACACATACTAGAAAGGACATCCGCCGCTGAGACTCCACAGACGCTGCCGGAATCCGTCCGGCCGCGCCGCTGTATACCGGACGACATTCAAACCTACTTCGATTGTAGTACTCAAGATTCCGACGACATTGCCGGAAGCGACGACGGAATTTTCGGGTACCTAAACTCGTATTTTCCTTCATCAGCATCAGTTTTTCATAGCGCACTCGATGCTTAA 711 49.65 MEGQSREEYIRYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAARAYDLAAIEHRGLNAVTNFDISRYIKCLRPGEQHIPDNNRPSSPNAGDTASEFDPKSFLEITFPSQSSSSDQPTTAPESHGGHPSSSSATLELLFHSSKFKHILERTSAAETPQTLPESVRPRRCIPDDIQTYFDCSTQDSDDIAGSDDGIFGYLNSYFPSSASVFHSALDA 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3113954 3118301 + Carg13492-RA Car08g00489 153063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00489 236 MobiDBLite consensus disorder prediction 100 114 - -
Car08g00489 236 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Car08g00489 236 MobiDBLite consensus disorder prediction 127 152 - -
Car08g00489 236 MobiDBLite consensus disorder prediction 95 115 - -
Car08g00489 236 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00489 Car-Chr8:3113954 Car10g00411 Car-Chr10:2061374 2.10E-77 dispersed
Car17g00860 Car-Chr17:7254275 Car08g00489 Car-Chr8:3113954 5.32E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3964 PF00847 AP2 1.80E-12 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00489 K09285 - csv:101206499 333.954