Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00498 ATGGATTGTTCCGATCTCACCCTACTTAAGTTTCAGCATGCAGCCTGTCTAGATTTGGACACATCAACATCTTTCTTTGGTGTTTATGATGGCCATGGAGGTAAAGCAGTTTCTAAGTTCTGTGCCAAGTACCTTCACCGACAGGTGCTCAAGCACGAATCATACATGGCTGGAGATGTGGGAACTTCATTACAGAAGTCCTTTCTCAGAATGGATGAGATGATGCTTGGACAGAGGGGATGGAGAGAGTTAGCTGTTTTGGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGAGTAGCGAAGCTAACAACCAAGTGGACGATTGGCCTGCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCAATCATTCGAAATAACCAACTTGTGGTAGCAAATGCTGGTGATTCTCGCTGTGTCATTTCCAGAAAGGGCCAGGCATATAATCTATCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCTGGTGGTTTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCACGAGCTATAGGAGACATGGAATTTAAGCAGAACAAAAGTATGCCTGCAGAAAAGCAGATTGTAACAGCCAACCCAGATGTAACAACTGTTGAGCTTTGTGAGGATGACGAGTTTCTTGTAATTGCCTGTGATGGGATCTGGGATTGCATGTCTAGCCAACAACTGGTCGACTACATTGGAGATCAACTAAAAACAGAAAGCAAACTCTCAGTTATTTGCGAGAGAGTATTTGACAGATGTTTGGCACCTTCAGCTGGTGGTGAAGGATGTGACAACATGACCATGATCTTGGTTCAGTTTAAGAAACCCTTCAACCCAAATGCTGCTTCTGCTGAGGAGCTGCCTTCATCGTCCAATCAACTTAGATCTGATGATCCAAACGAAGGCTCGTCTAAAACCGAATAG 1008 44.64 MDCSDLTLLKFQHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKHESYMAGDVGTSLQKSFLRMDEMMLGQRGWRELAVLGDKMDKISGMIEGFIWSPKSSEANNQVDDWPAEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDVTTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKTESKLSVICERVFDRCLAPSAGGEGCDNMTMILVQFKKPFNPNAASAEELPSSSNQLRSDDPNEGSSKTE 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3151221 3154642 + Carg13501-RA Car08g00498 153072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00498 335 Pfam Protein phosphatase 2C 11 75 IPR001932 -
Car08g00498 335 Pfam Protein phosphatase 2C 128 286 IPR001932 -
Car08g00498 335 ProSitePatterns PPM-type phosphatase domain signature. 25 33 IPR000222 GO:0043169
Car08g00498 335 MobiDBLite consensus disorder prediction 309 335 - -
Car08g00498 335 ProSiteProfiles PPM-type phosphatase domain profile. 1 301 IPR001932 -
Car08g00498 335 MobiDBLite consensus disorder prediction 311 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01289 Car-Chr1:11625862 Car08g00498 Car-Chr8:3151221 1.67E-143 dispersed
Car08g00498 Car-Chr8:3151221 Car17g00957 Car-Chr17:7770078 1.92E-35 dispersed
Car08g00498 Car-Chr8:3151221 Car17g00854 Car-Chr17:7209200 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00498 K17499 - csv:101214132 608.986