Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00540 ATGAGAAAAGAAGAAAATCACATCAGGGTTAATATTGGAGAATTCCCTGGTAGAATTACGCGTGCTCGGGCTGCTGCATTTAGTGCATCAGCACAGCTGCCTCCAAGAGTACCTGCGCAACAACAAGAGAAGCGGGTTGCACAAGCTAATCGGAAAAGAGCTGCTTCAGAAGAAAAGAGCTGCCATTCTATTGATAAATCATTACGACCATATAAACGGAGGGCCGTGCTTCAGGATGTCAGCAATGTATGCTGTGAACCTTCATACTCGGAATGTTTTGATGCAGCTAAAGTTCAGGCCAATTGTAGTAAGCCGACTATCAGAAACCGTTTCAAGAAGTCCAAAGGAGCTTCATCAGTTTGTGTGGCTAACTCCAAGGTTCCTCTTGACCGTAGAACCGAAGGAGCCTCATCAGTTGGTGTGGTTTACTCCAAGGTCCCTCTTGACCTTAGAACAGAAGATGTACAAGAAAATGTCAAATCAAAAGCTAAGTTGAAAGTTGAACATTCAAGTAATTCTGAAGACCATGGGACACATCATCGGGTAGGCAGTGGTATAAAGGAAGAGGTCACAAGTTATCTTCGGGATGATAATTCGAGATCTCTAAGTCCTTTAGAGTCTCAGAATTTTCAAAATAAAGAGAAAGTGTTGCCTCTGGGGACAAGAAGCAACCTGGACGTTATGGACATCGATTGTAATGACAAAGATGCTCAACTGTGCACTGTCTATGCCCATGAGATCTACAACAATTTACGTGTTGCTGAGCTAACCAGAAGGCCACGTCCAGATTTCATGGAAACAGTGCAAACAGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTATCGGAGGAATACAAGTTAGTACCAGACACTCTCTACTTAACTGTATTTTTCGTCGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAACTGTTGGGTATCACTTGCATGTTAATTGCTTCGAAGTACGAAGAAATTTGTTCCCCACGCGTTGAAGACTTTTGTTTCATCACTGATAGCACCTACACAAAAGAGGAGGTTTTGAATATGGAAGGTCAGATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGTAAAATCTTTCCTCAGGAGATACGTTCGTGCTGCACAAACGACTTTCAAGACCCCTAGTCTTGAACTCGAGTGCCTTGCCAACTATCTAGCCGAATTAACACTGGTCGACTACGGTTTCTTGAATTTTCTTCCCTCGGTCATAGCTGCATCAGCTGTATTTCTTTCCAAATGGTCGTTGGATCAGTCGAGTCACCCATGGAATTCAACCCTGGAATACTATACCTCATATAAAGCATCAGATCTGAAACCAACTGTTCTTGCTTTACAAGATTTACAGTTGAACACCAATGGTTGTCCTCTCAGTTCGATTCGCGTCAAGTATCGACAAGAAAAGTTCAAAGGTGTCGCAACTTTGTCGTCTCCGAAATTACTTGATACGCTATTCTGA 1518 42.62 MRKEENHIRVNIGEFPGRITRARAAAFSASAQLPPRVPAQQQEKRVAQANRKRAASEEKSCHSIDKSLRPYKRRAVLQDVSNVCCEPSYSECFDAAKVQANCSKPTIRNRFKKSKGASSVCVANSKVPLDRRTEGASSVGVVYSKVPLDLRTEDVQENVKSKAKLKVEHSSNSEDHGTHHRVGSGIKEEVTSYLRDDNSRSLSPLESQNFQNKEKVLPLGTRSNLDVMDIDCNDKDAQLCTVYAHEIYNNLRVAELTRRPRPDFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFVDWFLSQNYIERQKLQLLGITCMLIASKYEEICSPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTVKSFLRRYVRAAQTTFKTPSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWSLDQSSHPWNSTLEYYTSYKASDLKPTVLALQDLQLNTNGCPLSSIRVKYRQEKFKGVATLSSPKLLDTLF 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3380090 3386521 + Carg23154-RA Car08g00540 153114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00540 505 Pfam Cyclin, N-terminal domain 246 372 IPR006671 -
Car08g00540 505 Coils Coil 39 59 - -
Car08g00540 505 MobiDBLite consensus disorder prediction 165 186 - -
Car08g00540 505 Pfam Cyclin, C-terminal domain 375 497 IPR004367 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00540 Car17g00774 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00540 Car-Chr8:3380090 Car12g00289 Car-Chr12:1889539 3.21E-111 dispersed
Car19g00427 Car-Chr19:6071411 Car08g00540 Car-Chr8:3380090 3.12E-64 dispersed
Car17g00774 Car-Chr17:6828462 Car08g00540 Car-Chr8:3380090 0 wgd
Car08g00540 Car-Chr8:3380090 Car09g00418 Car-Chr9:2316309 2.29E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00540 K06627 - csv:101222299 844.343