Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00553 ATGGCGACTTGGAATCAAACTCCCTTTGATTGCTTCATCATCCTGCTTTTGCTTGTAGCGCTTTCAAACGCTCATTCTGATGTATTGACACAAGGCCAGGAACTAACACCTGGGTCTTGGCTAATCTCAGCCACAGGGGCTTTATCCCTCGGGTTTTACAGTCCTAGTCTACTCAACAACAGTCACATAGCCATTTGGTATGAAGGAGATCCAAAGAACCCAGTGTGGATAGCCAATCCAAATTTTGCATTTCCCGGAGATTTTGGGATGCCCTGTCTCACAATCGACAGCAACGGCAGCTTGAAGATTGTACCTAAACAAAGAAATGGACATGCCTATAGTTTCTATCTCTATGAAGCTGAAGAGCCCATGAACAGCAGCGCCATGCTACTCGACAATGGCAATTTTATATTAGGTGTGTTGAATCCTGATGGGTCAATCAAGCAACAGCTATGGCAGAGCTTTGATCATCCAACCGACACTCTTCTACCTGGGATGAAAATTGGGATCAATCATAAAACTGGATCTACTTGGTCTATAACATCACAAAGAGGAGATTATTCTGTTCTATCAGGGTCTTTCACACTCACAATGAATCCCAACAATACAAACCAGTTACTGATATTACATAGAGGAGCTATTTTCTGGACTAGTGGAAACTGGCGGGATGGCCGGTTTGAATTCTCAGAAGAACTTTCAAGCATCAACAATCAAGAATTCGTGTTCAGGCGATTTTCGAATGAGAATGAGACCTTCTTCAATTACTCAACCTCCAACTTGAACAATGGAGTGATTGAAATTCAACCCCGGTTGAGATTGGTAAACGATGGAAAATTGGTGGGGAGTAATTGGGATTTGAAAGTTGAATGTCCCTATTTTGAGAACGAGTTGTTTGAGGTGGCTAAGGGTGTTTCTGGAGATGGGTGTGTGGGGAAGAAGCAGCACAAAGTACCAGAATGTCGAAATCCGCCGAAACGATTTTCAACCACACAGAGATTTGGTAACATGGAGAGAAATAGTTTGAGATACAGTGACAGTGAGAATCTCACAATTTATGATTGTGAAAAGATTTGCATTTCAAGCTGTGGTTGCATAGCTTTTAGTTCTACGAATGAAGAAGGCACTGGCTGTGAGACATGGAATGTGGGAGCAATGTTTGTTCCTGGGAAGGGAAGCAAGCGGATTATTTGGTCCATTCAGGAGACTGAAGGGAAAGCTGTAAGAAAACTAAGGAGGAAGGATTCAGAGCATCAAAATGTTCTACAAGAAATGGGGGCCAAATCTAAAAGTTCTAACATTCTGAAAACTAAGAACAAGCAGAGAAGAGACATAAAGAACTCCGAACTGCAGTTCTTCACATTTGAAAATGTAGTTTCTGCAACAAATAATTTCGCTGACAATTGTAGGCTGGGAGAAGGTGGTTTTGGACCCGTTTATAAGGGAAGTTTGGATGATGGCCAAGAAGTTGCTATTAAGAGACTGTCAAAGAAATCCGGACAAGGACAAGAGGAGTTTAAGAATGAAGCCATGCTGATTGCCAAACTGCAACACACTAATCTGGTTAGGCTTATTGGTTGCTGCATTCATAAAGAAGAGAGATTATTGGTGTACGAGTACATGCCCAACAAAAGCCTTGACTCCTTCCTCTTTGATCCAGTGAGAAATTTAGTACTAGATTGGGACAAACGCCTGCACATAATCCAAGGGATAATTCAAGGACTACTTTACCTTCACACCTATTCTAGATTACGAATAGTTCATCGAGATTTAAAAGTTAGCAACATCTTGCTTGATGATGAGATGAATGCAAAAATATCGGATTTTGGCATGGCTAGAATCTTTAAGCCCACGGAACAAGAAGCAAATACTAGTCGCATTGTTGGTACATATGGTTATATATCACCTGAATTTGTAATGGGCGGTACTTTCTCGATAAAATCAGATGTCTACAGCTTTGGAGTGTTGTTATTAGAGATCATAACAGCTCAAAAAAACTACCACAATTATGACGTTGGACGGCCTATCAATCTCATAGGACATGCATGGGAACTGTGGATGGAAGGCAGAGGAGAAGAACTGATCGATTCAACTTTGTACAACTCCGATCAGAAACAGAAAGCTCTAAGATGCATCCATGTTAGTCTTCTATGCGTCCAACAAATGCCAGCAGATAGACCTACCATGCTTGATGTTCATTCCATGATTCTTAATGATACTACTCAACTTCCATTGCCTAAACAGCCTCCATTTTTCATCACCCAGAACGCCAAATTGGAAGGGATGATAGATGGCACAGAGATCAAATCGGAATCAACAACAGAAATACGTTCTTCGAATAACATGTCAGTCTCTATTATGGTTGCCAGATGA 2370 41.27 MATWNQTPFDCFIILLLLVALSNAHSDVLTQGQELTPGSWLISATGALSLGFYSPSLLNNSHIAIWYEGDPKNPVWIANPNFAFPGDFGMPCLTIDSNGSLKIVPKQRNGHAYSFYLYEAEEPMNSSAMLLDNGNFILGVLNPDGSIKQQLWQSFDHPTDTLLPGMKIGINHKTGSTWSITSQRGDYSVLSGSFTLTMNPNNTNQLLILHRGAIFWTSGNWRDGRFEFSEELSSINNQEFVFRRFSNENETFFNYSTSNLNNGVIEIQPRLRLVNDGKLVGSNWDLKVECPYFENELFEVAKGVSGDGCVGKKQHKVPECRNPPKRFSTTQRFGNMERNSLRYSDSENLTIYDCEKICISSCGCIAFSSTNEEGTGCETWNVGAMFVPGKGSKRIIWSIQETEGKAVRKLRRKDSEHQNVLQEMGAKSKSSNILKTKNKQRRDIKNSELQFFTFENVVSATNNFADNCRLGEGGFGPVYKGSLDDGQEVAIKRLSKKSGQGQEEFKNEAMLIAKLQHTNLVRLIGCCIHKEERLLVYEYMPNKSLDSFLFDPVRNLVLDWDKRLHIIQGIIQGLLYLHTYSRLRIVHRDLKVSNILLDDEMNAKISDFGMARIFKPTEQEANTSRIVGTYGYISPEFVMGGTFSIKSDVYSFGVLLLEIITAQKNYHNYDVGRPINLIGHAWELWMEGRGEELIDSTLYNSDQKQKALRCIHVSLLCVQQMPADRPTMLDVHSMILNDTTQLPLPKQPPFFITQNAKLEGMIDGTEIKSESTTEIRSSNNMSVSIMVAR 789
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 3462995 3466237 - Carg23167-RA Car08g00553 153127
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car08g00553 789 Pfam D-mannose binding lectin 74 184 IPR001480 -
Car08g00553 789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 585 597 IPR008271 GO:0004672|GO:0006468
Car08g00553 789 Pfam PAN-like domain 347 381 IPR003609 -
Car08g00553 789 Pfam Protein tyrosine and serine/threonine kinase 469 732 IPR001245 GO:0004672|GO:0006468
Car08g00553 789 ProSiteProfiles Bulb-type lectin domain profile. 26 151 IPR001480 -
Car08g00553 789 ProSiteProfiles Protein kinase domain profile. 464 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g00553 789 MobiDBLite consensus disorder prediction 414 439 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00553 Car-Chr8:3462995 Car18g00312 Car-Chr18:1872334 1.61E-126 dispersed
Car17g00749 Car-Chr17:6671640 Car08g00553 Car-Chr8:3462995 1.35E-07 dispersed
Car08g00553 Car-Chr8:3462995 Car09g00824 Car-Chr9:5016207 2.55E-150 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89047 PF07714 PK_Tyr_Ser-Thr 2.60E-47 CL0016 Car PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00553 - - csv:101221041 1231.08