Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00564 ATGACATATTTTCCTAGTTTAAGCAATCCAAGAGAGTCCACGTTGGGTGACCAAAAACTTGGTTCTTCTTGCCAAGAACAGCTGCTCTGTTCTGGGAATTTGATGATGTTTATGAATCATCAAGACCCTTCTTGCGGTGATTACTCTGAGATTTTTTCTGGGGTTTCTTCAAATTATGTTGAATCTGTGGGAGATAGAAGTAATGGTGAAATGGGTTTCATTCCACCGGTTGTGGGAATTTTAGATCACTCAAATTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCACCTTCTGTTGTTTCATTGCCTTCATTTCCTTCCCAATATCAGACCCGTGCCTTGCCTTCTTCATTTATCTGTGCACCTCCTTCGATCTTTGAGCAAAGGTCGAATCCGAAACTGTGTATGTCTGATGCAAAAAATGGTATGTATATGTCGGTTGCTGCTGCGAATTTGGTTTCGAATTCGATATACATTGAAGCTGCACAGCAGTTGCTTGATGAAGTTGTTAGCATTGGGGAAGCTTTGAAGGAGTTGAAGTCTAAGAAACTCAAGGGTTCTAATGATCTGACTGGGGAGATGTGTTCCGATGCGACGGATTCGTTGCTTGCGAATTCGTCTGGCGATCTATCGCCTACCGAACGACAGGACTTGAAGAACAAGAACTCGAAGCTGTTGTCCTTGTTGGGTGAGGTCGATCGAAGATACAAGCAATACTACCAACAAGAGCAGTTCTTAGCATCATCGTTTGACCTGGTAGCAGGCCGTGGGGCTGCAGAGTTCTACACTGCACTTGCACATTGGACTATTTCGTGTCACTTTCGACGCCTGCGAGATGCCATCAATGCACAGATTAAGACCACAAGAAGAACCTTAGGGGAGCAAGATGCTTCACATTCTGGCCAAGAGGGCATTCCTCGTCTCCGCTTTGTCGATCAGCAGCTCAGGCAACAGAGAACCCTTCAGCAGCTCGGCGTCACGTCACATAGTTGGAGGCCTCAACGAGGACTACCCGAAAGCTCCGTGTCGATTCTTCGTGCTTGGCTGTTTGAACACTTCCTCCATCCATATCCCAAAGATTCAGAGAAACTTAAGCTAGCAAGACAAACTGGCCTGACTCGAAACCAAGTTGCAAACTGGTTCATAAACGCGCGTGTTCGGCTATGGAAACCGATGGTCGAAGAGATGTACAAAGAAGAATTCGGAGACACGAACATGGACATCAAATCCTCACCAGAAAACGCATCCAAACCATCATGGAACAACAACTCACTCTTCTCCGAGGACAGGTCAGGAGACAAGTTACACGACAACACGAAGTCAGCAGCAAGCAACAACGAGCGAGTTCTCTACTGTCCGTGTTCTACCGACGACATGATCAAGCCGAGCAACTTCTCAGTCGACGGAGATGTTTCACTAGCACTGGAGCTGAAGCACTGCGAAGGCGAAGAATTCGGCATGTTCGGAAGTAGTAACAATAGAATCGTCGGTTCTATAGAGCTTGAGACACAAGATTTCCAATGCAGGCTCCCAAGCTCAAATATGTTGCATGATTTTGTAGTATGA 1575 45.97 MTYFPSLSNPRESTLGDQKLGSSCQEQLLCSGNLMMFMNHQDPSCGDYSEIFSGVSSNYVESVGDRSNGEMGFIPPVVGILDHSNFQCQGVSLSLSTHSPSVVSLPSFPSQYQTRALPSSFICAPPSIFEQRSNPKLCMSDAKNGMYMSVAAANLVSNSIYIEAAQQLLDEVVSIGEALKELKSKKLKGSNDLTGEMCSDATDSLLANSSGDLSPTERQDLKNKNSKLLSLLGEVDRRYKQYYQQEQFLASSFDLVAGRGAAEFYTALAHWTISCHFRRLRDAINAQIKTTRRTLGEQDASHSGQEGIPRLRFVDQQLRQQRTLQQLGVTSHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDTNMDIKSSPENASKPSWNNNSLFSEDRSGDKLHDNTKSAASNNERVLYCPCSTDDMIKPSNFSVDGDVSLALELKHCEGEEFGMFGSSNNRIVGSIELETQDFQCRLPSSNMLHDFVV 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3728662 3731485 + Carg18822-RA Car08g00564 153138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00564 524 MobiDBLite consensus disorder prediction 410 431 - -
Car08g00564 524 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 29 451 - -
Car08g00564 524 SUPERFAMILY Homeodomain-like 335 402 IPR009057 -
Car08g00564 524 Gene3D - 329 408 - -
Car08g00564 524 CDD homeodomain 334 395 IPR001356 GO:0003677
Car08g00564 524 MobiDBLite consensus disorder prediction 410 444 - -
Car08g00564 524 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 451 - -
Car08g00564 524 SMART prehox3 150 286 IPR006563 -
Car08g00564 524 SMART HOX_1 334 398 IPR001356 GO:0003677
Car08g00564 524 ProSiteProfiles 'Homeobox' domain profile. 331 394 IPR001356 GO:0003677
Car08g00564 524 Pfam Homeobox KN domain 351 390 IPR008422 GO:0003677|GO:0006355
Car08g00564 524 Coils Coil 165 185 - -
Car08g00564 524 Pfam Associated with HOX 156 284 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00564 Car-Chr8:3728662 Car20g00709 Car-Chr20:4092444 6.37E-105 dispersed
Car17g00796 Car-Chr17:6933530 Car08g00564 Car-Chr8:3728662 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3970 PF07526 POX 1.20E-36 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00564 - - cmax:111494608 990.334