Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00568 ATGGAAGGTCCTTCGCTTCACGGTACGCTTCACGCCACAATCTATGAAGTCGACAGGTTGCATACTGGTGGTGGATCCAACGTCTTCAGCAAGTTAATGCAAAACCTTGAGGAGGCGGTTGGAATTGGCAAAGGAGTTACCAGACTATATGCAACTATAGATTTAGAAAAGGCTAGAGTCGGAAGGACACGAAAATTGGAAAATGAACCCCATAACCCTAGATGGTATGAATCTTTTCACGTCTACTGTGCCCATAGGGCATCAAATGTTATCTTCACCGTGAAGGATGATAACCCTATCGGTGCAAGTTTGATTGGACGTGCATATGTACCGGTGGAAGACATCGTAGATGGGGAGGAAGTTGACAGGTGGGTTCCACTCTTAGATGAAGAAAAAAATCCAATTGAAGGAGAATCTAAGATCCGTGTCAAGCTTCAATACTTCAGTGTTACTAAAGATCGCAATTGGGGTCGTGGTATAAGAAGCCACAAATTTCCTGGAGTCCCCTACACATATTACCCACAGAGACAAGGTTGTAAAGTCTCTTTGTATCAAGATGCTCATATCCCTGATAATTTTGTTCCTAAAATACCTCTTGCTGGAGGAAAGAATTATGCTCCGTCCAGATGTTGGGAAGATATTTTCGACGCTATACAAAATGCAAAACACATGATCTACATCACAGGATGGTCTGTTTATACAGAAATCGCCTTGATAAGAGACTCAAGGAGGCCAAAGCCCGGAGGAGACACCATGCTTGGTGAGCTGCTTAAGAAGAAAGCAAGTGAAGGCGTCAGAGTTCTTATGCTTGTCTGGGATGACAGAACATCAGTCGGTTTACTAAAGAAGGATGGTCTGATGGCTACTCATGATGAAGAAACTGAACAGTTCTTTCGAGATACTGATGTCCACTGTATCTTGTGCCCTCGTAATCCTGACGATGGTGGAAGCATTGTTCAAGACCTACAAATCTCTACAATGTTCACTCACCATCAGAAGATTGTTGTTGTGGATAGCCCAATGCCAAGTGGAGATTCGAATAAGAGGAGAATTGTGAGTTTCGTTGGTGGCCTTGATCTTTGTGATGGCAGGTATGACACACCCTTTCATTCCCTCTTCAGGACATTGGATACTGCACATCACGATGATTTCCATCAACCCAACTTTCCTGGTGCATTAATAACAAAAGGTGGACCAAGGGAACCTTGGCACGACATCCATTCCCGACTTGAAGGGCCCATTGCCTGGGATGTCTTATTCAATTTTGAGCAAAGGTGGAAGAAACAAGGTGGGAAGGATGTCCTTGTGCAGCTTCGAGAGCTTGATGAAATAATTATTCCTCCATCTCCTGTTATGTACCCAGATGATCATGAAACCTGGAATGTTCAATTGTTTAGATCTATAGATGGTGGGGCAGCCTTTGGCTTTCCTGAGACCCCCGAAGATGCTGCCAGAGCTGGGCTAGTTAGTGGGAAAGATAACATTATTGATCGAAGTATTCAAGACGCTTACATTAATGCTATTCGGCGGGCTAAGAATTTTATTTATATTGAAAACCAATATTTCCTTGGAAGTTGTTTTGGATGGTCTCCTGAGGATATCAAGCCTGAGGATATTGGAGCCTTGCACTGTATCCCAAGAGAGCTTTCCCTAAAGATCGTAAGTAAGATCGCAGCAGGAGAAAGGTTCACCGTCTATGTAGTTGTCCCAATGTGGCCAGAAGGAATACCAGAAAGTGGATCGGTTCAGGCAATATTAGATTGGCAGAGGAGGACATTTGAGATGATGTATAAAGACGTGATTCAGGCTCTTAGAGATAACGGTATCGAGGAGGACCCCCGTAACTACTTGACATTCTTCTGTCTTGGCAATCGGGAAGTCAAGAGGTCTGGAGAATATGAACCTCCAGAGACACCAGAGGAGGATTCCGATTACATGAAAGCCCAGCAGGCCAGGCGTTTCATGATTTATGTTCACACCAAGATGATGATTGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGAGCAAGGGACTCTGAGATAGCTATGGGCGGTTATCAGCCATATCATCTGTCAACCCATGAACCTGCACGTGGTCAAGTTCACGGATTCCGAATGTCCCTATGGTATGAACACCTTGGTATGCTTGATGAATCTTTCCTTCGGCCAGAAAGCGAAGAATGTGCTTCGAAGGTTAACAGAATTGCTGATAAGTATTGGGATCTGTTTTCAAGTGAAGCACTTGAGAGGGACTTGCCCGGTCACCTCCTCCGCTATCCCATCGGCATAAGCAGTGAAGGTAATGTGACAGAGCTCCCAGGATTTGAGTTCTTCCCCGACACCAAAGCACGTATACTCGGAACAAAATCTGACTACCTCCCCCCCATCCTCACTACTTAG 2427 44.62 MEGPSLHGTLHATIYEVDRLHTGGGSNVFSKLMQNLEEAVGIGKGVTRLYATIDLEKARVGRTRKLENEPHNPRWYESFHVYCAHRASNVIFTVKDDNPIGASLIGRAYVPVEDIVDGEEVDRWVPLLDEEKNPIEGESKIRVKLQYFSVTKDRNWGRGIRSHKFPGVPYTYYPQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYAPSRCWEDIFDAIQNAKHMIYITGWSVYTEIALIRDSRRPKPGGDTMLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEQFFRDTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSPMPSGDSNKRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGALITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDVLVQLRELDEIIIPPSPVMYPDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPEDIKPEDIGALHCIPRELSLKIVSKIAAGERFTVYVVVPMWPEGIPESGSVQAILDWQRRTFEMMYKDVIQALRDNGIEEDPRNYLTFFCLGNREVKRSGEYEPPETPEEDSDYMKAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPYHLSTHEPARGQVHGFRMSLWYEHLGMLDESFLRPESEECASKVNRIADKYWDLFSSEALERDLPGHLLRYPIGISSEGNVTELPGFEFFPDTKARILGTKSDYLPPILTT 808
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3743854 3748141 + Carg18818-RA Car08g00568 153142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00568 808 Pfam C2 domain 36 127 IPR000008 -
Car08g00568 808 Pfam Phospholipase D C terminal 726 798 IPR024632 -
Car08g00568 808 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Car08g00568 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Car08g00568 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Car08g00568 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Car08g00568 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00123 Car08g00568 CCT
Car01g00123 Car08g00568 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00123 Car-Chr1:625607 Car08g00568 Car-Chr8:3743854 0 dispersed
Car05g00326 Car-Chr5:1771728 Car08g00568 Car-Chr8:3743854 0 dispersed
Car08g00568 Car-Chr8:3743854 Car17g00003 Car-Chr17:17533 0 dispersed
Car08g00568 Car-Chr8:3743854 Car08g00824 Car-Chr8:5496173 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00568 K01115 - csv:101206113 1563.9