Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00606 ATGGCTTGGTTCACCATTGGAAGCTTCCAAGATTCCTTTAGCTTGCGCTCTTGCAAGGCGTATCTTGCTGAGTTCATCTCCACCTTGCTCTTCGTTTTCGCCGGCGTCGGTTCCGCCATTGCCTACGATAAAATAACATCCTCTGCAGCTTTGGACCCAGCGGGGCTGGTGGCGGTGGCGGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTCTCTGTCGGAGCCAACATCTCCGGTGGCCATGTCAACCCAGCGGTGACATTCGGCCTTCTTCTTGGTGACCAAATCAGCCTAATTACGACCATATTTTACTGGATTGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTTACTGGCGGCCTGGCAGTTCCGGTCCACAGCGTGGCGGCCGGCATCGGAGCAGCGGAAGGAGTTGTGATGGAAATTGTCATCACATTCGGTCTGGTTTACACGGTCTATGCGACGGCGGCCGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCAATTGCCATCGGATTCATCGTCGGAGCAAACATTTTGGCAGCCGGACCGTTTTCCGGCGGATCGATGAACCCGGCCCGGTCATTTGGACCGGCGGTGGTCAGTGGGGACTTTCACGACAACTGGATTTACTGGGTTGGGCCACTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTATGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAAGCGATTACTAA 747 54.08 MAWFTIGSFQDSFSLRSCKAYLAEFISTLLFVFAGVGSAIAYDKITSSAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVAAGIGAAEGVVMEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPSDY 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3926839 3928316 - Carg18778-RA Car08g00606 153180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00606 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Car08g00606 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Car08g00606 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00606 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Car08g00606 248 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
Car08g00606 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00606 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00606 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00606 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00606 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00606 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00606 248 PANTHER MIP PROTEIN 1 248 - -
Car08g00606 248 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g00606 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01297 Car-Chr2:8646989 Car08g00606 Car-Chr8:3926839 1.19E-126 dispersed
Car04g01446 Car-Chr4:8395801 Car08g00606 Car-Chr8:3926839 1.66E-40 dispersed
Car08g00606 Car-Chr8:3926839 Car14g00213 Car-Chr14:1009026 5.07E-95 dispersed
Car16g00627 Car-Chr16:4005989 Car08g00606 Car-Chr8:3926839 1.54E-39 dispersed
Car08g00606 Car-Chr8:3926839 Car03g01082 Car-Chr3:8799843 2.43E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00606 K09873 - csv:101218611 460.685