Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00617 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAACGGCAAATACGTTCGGTACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTCTATCATGAATGTCCAAAACCCAGTTCCATTCGTCGTCAGCAGCTTATCAGAGAGTGCCCCATTCTTTCTAATATCGAGCCTAAGCAAATCAAAGTCTGGTTTCAAAATAGAAGATGTCGTGAAAAACAGAGGAAAGAATCGTCTCGGCTTCAAGCTGTGAATAGGAAGCTTACGGCCATGAATAAGCTTCTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCACAGCTGGTGTATGAGAATGGCTATTTCCGCCAGCATACTCAGAGTACGACGCTTGGAGCTAAAGACACAAATTGTGAACCGGTGGTAACTAGCGGTCAACACAATTTGACATCTCAGCATCCTCCTCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGTGGCTTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCATCTTGGTTTCGCGATTGCCGAGCTGTGGATGTTCTAAATGTGCTGCCAACAGCTAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTCTATGCGCCTACAACGTTGGCGCCTGCTAGGGACTTCTGGTTGTTACGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATCTGTGAGAGATCACTTAAGAACACCCAGAATGGTCCAACCATGCCTCCAGTGCAGCATTTTGTTAGAGCAGAGATGTTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGTGGTTCTATCATTCACATTGTTGATCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTATTGCGTCCATTGTATGAATCATCCACTGTTCTTGCTCAAAAGATGACTATGGCGGCTCTACGCCAGTTGAGGCAGATAGCTCATGAAGTTTCACAGTCGAATGTAACAGGCTGGGGTAGACGCCCTGCAGCCTTACGTGCACTTGGTCAAAGGCTAACCCGGGGTTTTAACGAGGCACTTAATGGGTTTAACGACGAAGGGTGGTCTGTGATGGGAAATGATGGCATGGATGATGTAACTATTCTCGTAAATTCATCTCCTGACAAGCTAATGGGCTTGAACATTTCATTTGCAAATGGATTTTCTTCCATCAGTAATGCAGTTTTATGTGCTAGAGCATCCATGCTGTTGCAGAATGTGCCTCCTGCAATTCTACTGAGGTTCCTGCGGGAGCACAGATCAGAATGGGCAGATAACAACATTGATGCTTATTCTGCTGCTGCTGTTAAAGTCGGCCCGTGGAGCTTACCAGGGTCCAGAGTTGGAAGTTTTGCGAATCAAGTAATACTTCCACTAGCTCACACGATTGAGCACGAAGAACTTCTAGAAGTGATTAAACTGGAAGGCGTTGGCCATACACCTGAAGATGCAATTATCCCTAGAGAAATGTTTCTTCTACAACTCTGCAGTGGAATGGATGAAAACGCCATTGGCACATGTGCTGAGCTAATATTTGCTCCAATTGATGCTTCTTTTGCTGATGACGCACCGCTTTTACCCTCCGGGTTTCGGATCATACCACTTGATTCTGGAAAGGAAACATCCAGCCCAAATCGAACACTCGACCTTGCTTCTGCTCTTGAAATTGGGCCTGCTGGAAATAGAGCACCAAACGACGCTGTAAATTCTGGCTGTACGAGGTCTGTAATGACGATCGCCTTTGAATTTGCATTTGAGAGCCATATGCAAGAACATGTGGCATCAATGGCTCGACAATATGTTCGTAGTATTATATCGTCGGTCCAGAGGGTTGCATTAGCTCTCTCTCCTTCTCATTTAAGCTCTCATGGCGGACTAAGATCTCCCCTCGGTACTCCTGAAGCACAGACGCTTGCTCGTTGGATCTGCAACAGTTACAGGTGCTACTTGGGGGTGGAGCTATTAAAATCTGGTAACGAAGGAGGAGGTGAGCTTGTCCTGAAAACATTGTGGCATCACTCGGATGCGATCATGTGTTGCTCTCTAAAGGCATTGCCAGTGTTCACTTTTGCAAATCAGGCAGGCCTCGACATGCTCGAGACTACCTTAGTTGCACTACAAGACATAACATTGGAAAAAGTATTCGACGACCATGGAAAAAAGACGCTCTGCTCCGAATTTCCACAGATAATGCAACAGGGATTTGCCTGTCTTCAAGGAGGCATATGCCTATCGAGCATGGGCCGACCTGTCTCATACGAAAGAGCTGTGGCTTGGAAGGTACTAAATGAAGAAGAAAATGCACACTGCATCTGTTTTATGTTTGTGAACTGGTCTTTTGTCTGA 2520 46.63 MAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTLGAKDTNCEPVVTSGQHNLTSQHPPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNVTGWGRRPAALRALGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSSISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFANQVILPLAHTIEHEELLEVIKLEGVGHTPEDAIIPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKETSSPNRTLDLASALEIGPAGNRAPNDAVNSGCTRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHGGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGNEGGGELVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKVFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFV 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3969220 3973927 + Carg18767-RA Car08g00617 153191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00617 839 ProSiteProfiles START domain profile. 152 380 IPR002913 GO:0008289
Car08g00617 839 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Car08g00617 839 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Car08g00617 839 Pfam START domain 162 370 IPR002913 GO:0008289
Car08g00617 839 Coils Coil 82 113 - -
Car08g00617 839 MobiDBLite consensus disorder prediction 138 157 - -
Car08g00617 839 Pfam MEKHLA domain 695 838 IPR013978 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00617 Car17g00717 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00641 Car-Chr2:4832170 Car08g00617 Car-Chr8:3969220 0 dispersed
Car03g01304 Car-Chr3:9971940 Car08g00617 Car-Chr8:3969220 5.63E-62 dispersed
Car03g01305 Car-Chr3:9972929 Car08g00617 Car-Chr8:3969220 0 dispersed
Car04g01209 Car-Chr4:6951162 Car08g00617 Car-Chr8:3969220 0 dispersed
Car04g01210 Car-Chr4:6957154 Car08g00617 Car-Chr8:3969220 9.60E-51 dispersed
Car08g00617 Car-Chr8:3969220 Car09g00558 Car-Chr9:3161431 0 dispersed
Car17g00717 Car-Chr17:6541955 Car08g00617 Car-Chr8:3969220 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3976 PF01852 START 2.80E-54 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00617 K09338 - csv:101213106 1655.96