Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00629 ATGGGGAAAGCTACCAGATGGTTGAAGGGTCTGTTGGGAATCAAGAAAGACAAAGACCCATCTGGGAATTCCGATTCAAAACCAACGCCGGTGGTTTCCGACAGAAAGGAGAAGAAAAGATGGAGTTTTGCGAAGTCCGGTAGAGATTCCGGCCAAACGCCGCCGCGAACTGTGGCTGTAGATTCGGCTTGGTTCAGTTCTTACATTTCTGATTCGGAGAAAGAGCAGAACAAGCACGCAATTGCAGTGGCGGCTGCTACTGCTGCTGCTGCTGATGCTGCCGTCGCCGCGGCTCAGGCGGCGGTCGCCGTTGTCCGGCTGACAAGCCAAAGAAGAGGTCCTCTGTATACTACTGGAAGAGATAGATGGGCTGCTGTCAAGATTCAAACAGTCTTTAAAGGCTATTTGGCTCGAAAAGCTCTACGAGCTCTCAAGGGACTCGTTAAGTTGCAGGCTGTCGTTCGAGGATTTCTCGTCCGAAAACGAGCTGCTGCAACTCTTCACAGTATGCAGGCACTTTTTAGAGCTCAAACTGCTCTTAGAACTCAAAGAGCTCGTCGATCTTTCAATAAAGAAAATAGGTTTATTCCCGAGATTCGACCTCGGAAATCTGCGGAACGTTTCGATGAAACAAGAAGTGAATTTCATAGTAAGAGATTGTCTATAGCATCATCTTACGAAACCTCCATCAACTCATTGGACGAGAGCCCAAAAATCGTCGAAATCGACACTTACCGAACCCGATCAAAGTCTCGTAGGTACATCTCTACATTGTCCGAATATGGAGGAGACGAAGCAGCACCTCTTCAAGCAATCACTTCGCCATTGCCATATTCGAATCGACCTCGCACGTTTACGCTTGATTGTCACAATGTGCATCGAGATTTCGAATGGTGCTTAATGGGCGAAGACTGCAAGTTCCCTACGGCTCACAGCACGCCTCGGCTATCGAATTCATTCGCCTCAACGAACATGTCAGTTACCCCATCAAAGAGCGTCTGCGGCGACAGCTTCTTTAGGCCTTACCTGAACTGCCCGAGTTATATGGCGAACACGCAATCGTTTAAGGCGAAATTGAGGTCTCAAAGTGCCCCAAAACAAAGGCCAGAGCCAGGATCCAAGAAGAAGCTGTCGTTGAATGAAATAATGGCAGCAAGAAACAGCTTAAGCAGTGTAAGAATGCAGAGACCAAGCAACCAAACTCTGCAAGAACATGAAGAACATGAAGAACATGATGAAGATGAAGATGAAACATCATATGATTTTTGA 1269 47.36 MGKATRWLKGLLGIKKDKDPSGNSDSKPTPVVSDRKEKKRWSFAKSGRDSGQTPPRTVAVDSAWFSSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQRRGPLYTTGRDRWAAVKIQTVFKGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSIASSYETSINSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDCHNVHRDFEWCLMGEDCKFPTAHSTPRLSNSFASTNMSVTPSKSVCGDSFFRPYLNCPSYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEIMAARNSLSSVRMQRPSNQTLQEHEEHEEHDEDEDETSYDF 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4031350 4032936 + Carg18755-RA Car08g00629 153203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00629 422 MobiDBLite consensus disorder prediction 30 45 - -
Car08g00629 422 MobiDBLite consensus disorder prediction 356 422 - -
Car08g00629 422 MobiDBLite consensus disorder prediction 12 56 - -
Car08g00629 422 MobiDBLite consensus disorder prediction 383 399 - -
Car08g00629 422 Pfam IQ calmodulin-binding motif 122 142 IPR000048 GO:0005515
Car08g00629 422 Pfam IQ calmodulin-binding motif 148 162 IPR000048 GO:0005515
Car08g00629 422 Pfam Protein of unknown function (DUF4005) 313 403 IPR025064 -
Car08g00629 422 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Car08g00629 422 MobiDBLite consensus disorder prediction 408 422 - -
Car08g00629 422 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00077 Car08g00629 CCT
Car08g00629 Car14g01140 CCT
Car08g00629 Car14g01140 ECH
Car01g00077 Car08g00629 ECH
Car08g00629 Car17g00704 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01191 Car-Chr6:8722706 Car08g00629 Car-Chr8:4031350 1.24E-45 dispersed
Car08g00629 Car-Chr8:4031350 Car17g00704 Car-Chr17:6456875 0 dispersed
Car08g00628 Car-Chr8:4029391 Car08g00629 Car-Chr8:4031350 1.21E-15 tandem
Car01g00077 Car-Chr1:426983 Car08g00629 Car-Chr8:4031350 9.19E-84 wgd
Car10g00607 Car-Chr10:3093336 Car08g00629 Car-Chr8:4031350 1.03E-118 wgd
Car11g00535 Car-Chr11:2896851 Car08g00629 Car-Chr8:4031350 2.49E-122 wgd
Car14g01140 Car-Chr14:10044241 Car08g00629 Car-Chr8:4031350 9.07E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00629 - - cmo:103500774 582.022