Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00634 ATGGATTATTCGAACCGGGATGGATACGGGTCGAGAGTTGCAACGACAAACATGACGTCGCCGGTGTCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAATTCAAATTCTCACTTCTTCAACTCAGTTCAAGATCTCCCAATCAGCCCTCCATTGACAAGCTTTGCAACATCCGAAGACATGGATGCTATTGCGCCCTATGGATTCGACGACGGTAAATCGACGTCGGTTACACCGTGCTCTCTCGAGTCATTGGACTGCTTGCTTTCAGCTACAAATAGCAACACAGACACATCAGTTGAAGACAATGATGGATCAGTGTCAATGATCTTAACAGATTACACAAATTTATGGAACTTTGGAAGCAATGCAGCAACTACAAAGAGAACCCATCAAGAATCTACAGAGTACTCTGTTTTTTCCAACACCATCAAGAATCTCTCTGATTCAACTTCAAACAGTGGAGGGTTTAGGATCATAACAGATCAAAATCAACCAAAATCAAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAACTTCCAGCAATCATGTTCATCAGGATCATCATGTATTGATCAAGAACCTGACCCAGAAGCCATAGCACAGATGAAGGAAATGATATACAGAGCAGCAGCTTTGAGGCCAGTGAATTTGGGGGTAGAAGGGATAGAAAAGCCCAAAAGGAAGAACGTGAGGATCTCAACAGACCCACAAACAGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAAAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGGAACAAGATGGATACTGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTGAAGTCTCAGATCAAAGCTTTAGAGAATCTTGGGCAAAAGATTGAATCTTTGAACTGCCCTTCAACTAGCTTAGCCTTTTCTTTCAACCCATCTTTTCCCATACAATCATCTTCATCATTATCCCATAACCAATTTCCCCCAAAACTGAACTGA 1029 41.98 MDYSNRDGYGSRVATTNMTSPVSFWSNYQQGVEERFMISNSNSHFFNSVQDLPISPPLTSFATSEDMDAIAPYGFDDGKSTSVTPCSLESLDCLLSATNSNTDTSVEDNDGSVSMILTDYTNLWNFGSNAATTKRTHQESTEYSVFSNTIKNLSDSTSNSGGFRIITDQNQPKSKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAALRPVNLGVEGIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGNKMDTASMLDEAANYLKFLKSQIKALENLGQKIESLNCPSTSLAFSFNPSFPIQSSSSLSHNQFPPKLN 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4088823 4089851 - Carg18750-RA Car08g00634 153208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00634 342 Pfam Helix-loop-helix DNA-binding domain 253 292 IPR011598 GO:0046983
Car08g00634 342 MobiDBLite consensus disorder prediction 181 202 - -
Car08g00634 342 Coils Coil 282 309 - -
Car08g00634 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 243 292 IPR011598 GO:0046983
Car08g00634 342 MobiDBLite consensus disorder prediction 157 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00634 Car-Chr8:4088823 Car09g01018 Car-Chr9:6823919 4.34E-31 dispersed
Car17g00699 Car-Chr17:6399517 Car08g00634 Car-Chr8:4088823 1.24E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3978 PF00010 HLH 6.30E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00634 - - csv:101207907 474.167