Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00654 ATGACCTCCATCCACCACCACCACCCTCCTCCCCACCACCACCACCACCTCTCCAAATCCACCTCCGCCGTCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCGCCACCACTCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGTTCCCGACTGCATCCTAGCCCCCTACTTCCCTCACCATCGCCAACGCCAATTCCTCAACGCTCACAAACTCTTTGGCGTTAGCAACATCACCAAAATCATCAAAAACCTCGATCCCTTCCAAAAGGAAGAGGCAATGCGCACCATTATATTCCAATCCGACGTCCGATCCCTCGATCCGGTCGGCGGATGTTACCGCATCATTCGCGACCTTCAGCGCCAGATCCAGTACAGCAAAGCCGAGCTCGAGATCGTGCTTCATCAATTGGCGATCTGTAAGCACCAGGCTGCTGCCTCTGTTTCTGCCGCTGCGATTCTGGACGCGGATCATCCTATGAGTGGAGGATACGCCGGAATCGAGCACCAATTTGTGGAGGAAGGATTCGTAATTGGGGAAAATGAAAATGCGGAGAGTTTAGACGACGAAGCGGCGGAGGTTTGGGGGATTCAGGCTTCCCAAATCTCGCCCTGTTCTTCCTTCAAATCCTCTGTTCATGATTTTGATCATGTCGATATTCATTATCATCATCAACAATTTGTTAGGTTTCATCCGGATCATCATCAGTTTCTTCCTAAGAGTGAGGAAGAAGCAGGCATGGTGGAAATAGATAATGTGATATTGAAAGAAGATTCAGAGCCATTGCAAAATGACCAAGATGGAGAGTCCTAA 819 51.4 MTSIHHHHPPPHHHHHLSKSTSAVSSSSSSSSSTATTQACAACKYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSDVRSLDPVGGCYRIIRDLQRQIQYSKAELEIVLHQLAICKHQAAASVSAAAILDADHPMSGGYAGIEHQFVEEGFVIGENENAESLDDEAAEVWGIQASQISPCSSFKSSVHDFDHVDIHYHHQQFVRFHPDHHQFLPKSEEEAGMVEIDNVILKEDSEPLQNDQDGES 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4216033 4217939 - Carg13963-RA Car08g00654 153228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00654 272 MobiDBLite consensus disorder prediction 1 19 - -
Car08g00654 272 MobiDBLite consensus disorder prediction 1 33 - -
Car08g00654 272 Pfam Lateral organ boundaries (LOB) domain 39 134 IPR004883 -
Car08g00654 272 ProSiteProfiles LOB domain profile. 38 139 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00654 Car-Chr8:4216033 Car15g00283 Car-Chr15:1535046 1.01E-30 dispersed
Car05g00079 Car-Chr5:411648 Car08g00654 Car-Chr8:4216033 1.75E-33 transposed
Car17g00676 Car-Chr17:6257370 Car08g00654 Car-Chr8:4216033 2.37E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3979 PF03195 LOB 9.80E-36 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00654 - - csv:105436286 337.421