Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00730 ATGTCGATGCTTCTGGATGGAAGCAATTGGTTGATTAGCTGCCTGAAATGCAATGATTGTAACAAGAAACTGGGAACTGATAATGCATTGCTTCAATTTTACTCGACTCATATTCCTCTAATTTTAGTGTCTCCACTGGTAGGTTTCTCAGTACCACCTCCAACGTCAACTGGTGACTATGGTATTAATTTAGAACATCTTGTCTCACTGACCCGTGAACAAAACTTTTCTTCTCTACAACAATATGGAGGAGTCAAAGGCTTATCAAATTTATTGAAAACAAATACCGATAAAGGAATACCGGGGGATGAAACTGATTTACTAAAAAGAAGAAATACATTTGGATCAAATACATATCCACGTAAAAAAGGACGGAGTTTCTTGAGATTTCTTTGGGAAGCCTGGCAAGATTTAACCCTAATCATCTTGATTATAGCTGCAGTGGCATCATTAGCTTTGGGAATGAAAACAAAGGGTGTAAAGGAAGGATGGTATGACGGAGGAAGCATTTCCTTTGCTGTGTTTCTTGTCATAATGGTCACAGCGGTCAGTGATTATCGACAGTCTCTTCAGTTTCAGAACTTAAATGAGGAAAAACAGAACATACAAGTAGAGATCTTGAGGGATGGTAGAACTTTAAAGGTCTCAATATTTGATATCGTTGTTGGAGATGTTGTACCTCTTAAAATTGGAGATCAGATCCCTGCTGATGGAATATTAATCACCGGTCATTCACTTGCCATAGATGAATCTAGCATGACTGGCGAAAGCAAGATTGTTCGCAAGGATCAGAAGGCACCCTTTATGATGTCTGGTTGTAAAGTTGCAGATGGAGTTGGTACCATGATGGTAACTGCTGTTGGAATCAATACTGAATGGGGATTGTTGATGGCCAGTATCTCAGAGGATACTGGGGAAGAAACTCCCTTGCAGGTTCGGTTGAATGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGCGGTTGCAGTTTCTGTGCTAGCTATCCTTTTGGGCAGATACTTCACTGGAAATACACATGATGCAAATGGAAACATTGAATTTCAGCGTGGGCATACGAGTCTAGGTGATGCTGTAAATGGAGTAATTAGAATCGTTACTGTTGCTGTTACTATTGTGGTTGTTGCAGTGCCTGAAGGACTTCCTTTGGCTGTCACTCTAACATTAGCATACTCCATGAGGAAAATGATGGCCGATAAAGCATTGGTTCGTAGACTGTCTGCTTGCGAAACTATGGGTTCTGCAACAACAATTTGCAGTGATAAGACTGGAACGTTGACTTTAAATCAGATGACTGTGGTCGAGGCATGTGTTGGCAAGAAAATGATGAATCCCCCAGATGAGCCACTGGAGTTGCAGTCATTGGTTCTCAATCTGCTATATGAGGGCATTGCTCAGAACAGCGCAGGCAATGTTTTTGTTGCTATGGATGGGAGAAGTATAGAGGTCACTGGATCTCCTACAGAAAAGGCTATTTTATCTTGGGCTGTCAAGCTGGGAATGAAGTATGATGTTGTCAAATCAGAGTCTGAAGTTCTCCATGTTGTCCCGTTCAATTCAGAAAAGAAGCGAGGAGGTGTTGCGATAAAGCGGGCTGACTCAGAAGTCTACATACACTGGAAAGGAGCGGCAGAGATGGTCTTATCTTCTTGTACAAAGTTTATGGGAATGAATTGTGAAGTGCACTCAATGGAAGGCAATGAGGATTATTTTAAGGCAGCTATTAATGATATGGCTGCAAGAAGTTTGCGTTGTGTTGCGATTGCATATAGACCATATGAATTAGAGAAGGTTCCAGTAGATGAACAAGGTTTGGATCAATGGGATTTGCCTGCTGATGATCTTATTCTGCTTGCAATTGTTGGTATAAAGGATCCTTGTCGTGCTGGTGTTAAAGAGGCTGTTAAAGTGTGCACGGATGCTGGTGTCAAGGTGATGGGGAGGTCTTCACCCAATGACAAACTCTTGCTTGTTCAAGCATTAAGAAAGGGAGGAGACGTCGTTGCTGTAACAGGCGATGGGACAAATGATGCCCCTGCACTCCACGAGGCAGATATTGGTCTTTCTATGGGCATACAAGGCACTGAAGTTGCGAAAGAAAGTTCTGATATTGTTATCTTGGATGATAACTTTGCTTCAGTTGTAAAGGTTGTCAGATGGGGGCGTTCTGTGTATGCAAACATTCAGAAGTTCATCCAGTTTCAGCTCACTGTAAATGTTGCCGCTCTTGTGATTAATGTTGTTGCAGCTGTGTCTTCCGGTGATGTTCCTTTAAATACTGTGCAGCTTCTCTGGGTTAACCTGATCATGGACACACTCGGTGCTCTTGCATTAGCTACTGAACCACCAACGGACCACTTGATGCATCGGTCACCTGTTGGTCGAAGGGAACCCCTTATAACCAATATCATGTGGAGGAATTTGATTGTACAGGCTTTGTATCAAGTTGCTGTCCTTCTTGTTCTCAACTTCTATGCCACTGATATTCTTCAATTGAATACTGATAGCAAGAAGCACGCCTTTAATGTGAAGAATACAGTGATTTTCAATGCCTTTGTCCTCTGCCAAATATTCAATGAATTTAACGCTCGAAAACCAGATGAAATGAACGTATTCAGTGGCGTGACGAAAAATTACCTCTTTATGGGAATAGTTGGAACGACGTTCTTGCTTCAGATTATCATCGTCGAATTTCTAGGAAAATTTACTTCCACAGTAAAACTTGATGGGAAGCAATGGCTTATCTGCATTGCTATCGGCCTTGTGAGCTGGCCTCTGGCTGTCGTTGGCAAACTGATTCCAGTTCCTGAGACTCCATTGGGTAAATACTTCACAAAGCTAGTTCAACGGTACAGGAGGTCACATGGTGCTTAA 2892 42.08 MSMLLDGSNWLISCLKCNDCNKKLGTDNALLQFYSTHIPLILVSPLVGFSVPPPTSTGDYGINLEHLVSLTREQNFSSLQQYGGVKGLSNLLKTNTDKGIPGDETDLLKRRNTFGSNTYPRKKGRSFLRFLWEAWQDLTLIILIIAAVASLALGMKTKGVKEGWYDGGSISFAVFLVIMVTAVSDYRQSLQFQNLNEEKQNIQVEILRDGRTLKVSIFDIVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKAPFMMSGCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAVSVLAILLGRYFTGNTHDANGNIEFQRGHTSLGDAVNGVIRIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGKKMMNPPDEPLELQSLVLNLLYEGIAQNSAGNVFVAMDGRSIEVTGSPTEKAILSWAVKLGMKYDVVKSESEVLHVVPFNSEKKRGGVAIKRADSEVYIHWKGAAEMVLSSCTKFMGMNCEVHSMEGNEDYFKAAINDMAARSLRCVAIAYRPYELEKVPVDEQGLDQWDLPADDLILLAIVGIKDPCRAGVKEAVKVCTDAGVKVMGRSSPNDKLLLVQALRKGGDVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVAVLLVLNFYATDILQLNTDSKKHAFNVKNTVIFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFMGIVGTTFLLQIIIVEFLGKFTSTVKLDGKQWLICIAIGLVSWPLAVVGKLIPVPETPLGKYFTKLVQRYRRSHGA 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4675471 4685786 - Carg13886-RA Car08g00730 153304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00730 963 Pfam E1-E2 ATPase 201 403 - -
Car08g00730 963 Pfam Cation transport ATPase (P-type) 482 559 - -
Car08g00730 963 Pfam Cation transporting ATPase, C-terminus 762 939 IPR006068 -
Car08g00730 963 Pfam Cation transporter/ATPase, N-terminus 83 150 IPR004014 -
Car08g00730 963 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00730 Car-Chr8:4675471 Car12g00873 Car-Chr12:8608357 0 dispersed
Car08g00730 Car-Chr8:4675471 Car05g00682 Car-Chr5:4528221 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00730 K01537 - egr:104424210 1290.79