Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00734 GAAATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAGTCATGCACAGCATTCGATGCACACACAATCTGTGCAAGAACAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAATGAAGGTCACGGTATCATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGTGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCATATCAGGGTCAAGTTTATGTTTTTGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGTGTTCCCTCAATCCCAATAACTAATCAACCAAATGATAGGCATCTCACTGATGAAGCATTTAACCAGGCACTTGCCATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAGTTCACATCTTCCAAACCCATTCAGGAAGATTCATTATCGGCCACAACAAGTTGGGAATCAAATGAGACTTGGTGTTCTGATGGAAATGGATCCCATCAACAAGAAATTCTCTGTCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCCTGCGGACTCATGTGGGCAAACAAGCTTCAAGGATCTTATCAATATAGTAAATCTGAGACCCTGGACATAAATGTAGATGAATCATTTATTGATCTCTCGGCCTCTAACACTTATTGCAAGCATGGCCAATCCACTGCTTATTCATTTTTCCCCTCAACGAGAACCCTAGATTCTCCTCCTTCTGTCTGGGCTCCTACCATCGTGAAAGTTGAGCATAAGCTCCTCAAGTATATTTCTTCTGTATTGGTCAGAGTTCAGTATGACTCTGAAAATGATATGCTGCATTTAGCTGCTCTGATTTCCGTTCTAGAAATTCTTTTCCTGAAGACTGTTAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAAGCTTCAACAGGAATGAGAATGTTGTGCAGAATGGAGATTCTGAGTCCAATCCAAAAAGTGCATAGGAATTGTGACAGGATTGTGTCTTCCTGCAGAAGACGAAGGCGTGGACGAGTCTCTGGGCAGCCCGAATCTGATCTGGCGTGCCAGACACGATCGCTTTGCCATCAAACATCCCAGGTTTAG 1344 44.79 EMDGIHASDGRMHMSHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPNDRHLTDEAFNQALAIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIQEDSLSATTSWESNETWCSDGNGSHQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKLQGSYQYSKSETLDINVDESFIDLSASNTYCKHGQSTAYSFFPSTRTLDSPPSVWAPTIVKVEHKLLKYISSVLVRVQYDSENDMLHLAALISVLEILFLKTVRELCGTSQKHQTRVDKLQASTGMRMLCRMEILSPIQKVHRNCDRIVSSCRRRRRGRVSGQPESDLACQTRSLCHQTSQV 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4721919 4728027 + Carg13882-RA Car08g00734 153308

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00734 447 Pfam tify domain 85 113 IPR010399 -
Car08g00734 447 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Car08g00734 447 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Car08g00734 447 Pfam CCT motif 155 197 IPR010402 GO:0005515
Car08g00734 447 ProSiteProfiles Tify domain profile. 79 114 IPR010399 -
Car08g00734 447 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00734 - - - csv:101215755 508.834
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car08g00734 Car17g00597 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00734 Car-Chr8:4721919 Car11g01171 Car-Chr11:9390946 3.04E-64 dispersed
Car17g00597 Car-Chr17:5676352 Car08g00734 Car-Chr8:4721919 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g1014 . . . . . . . . Cmo08g00819 Cmo17g00616 . . . . . Cpe12g00537 Cpe17g00409 . . . . . . . . . . . . . . . . . . Lsi02g02837 Csa07g02285 . Cme01g02738 . . . . . . . . . . . Cma08g00850 Cma17g00633 Car08g00734 Car17g00597 . . Bhi09g00226 . . . . . . Cla09g00147 Cam09g0160 Cec09g0164 Cco09g0161 Clacu09g0166 . Cre09g0151 . . Chy01g02108 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car17g00597 CST 1 230 Tify Gene Family AT3G21175 56.1 3.7e-59 225.3
Car08g00734 CST 2 230 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Car05g00483 . 48 302 Tify Gene Family AT4G24470 50.4 1.5e-61 233.8
Car11g01171 . 89 302 Tify Gene Family AT4G24470 52.1 3.8e-49 192.6
Car19g00359 . 82 260 Tify Gene Family AT4G24470 59.2 2.1e-47 186.8
Car17g00597 CST 1 265 Tify Gene Family AT1G51600 59.3 8.9e-80 294.3
Car08g00734 CST 2 265 Tify Gene Family AT1G51600 59.6 9.9e-79 290.8
Car19g00359 . 79 280 Tify Gene Family AT1G51600 57.3 1.1e-53 207.6
Car11g01171 . 86 287 Tify Gene Family AT1G51600 57.1 5.5e-53 205.3
Car05g00483 . 348 523 Tify Gene Family AT1G51600 59.6 1.1e-50 197.6
Car12g00188 . 412 585 Tify Gene Family AT1G51600 55.8 1.7e-46 183.7
Car05g00483 . 48 302 Tify Gene Family AT4G24470 50.4 1.5e-61 233.8
Car11g01171 . 89 302 Tify Gene Family AT4G24470 52.1 3.8e-49 192.6
Car19g00359 . 82 260 Tify Gene Family AT4G24470 59.2 2.1e-47 186.8
Car17g00597 CST 1 265 Tify Gene Family AT1G51600 59.3 8.9e-80 294.3
Car08g00734 CST 2 265 Tify Gene Family AT1G51600 59.6 9.9e-79 290.8
Car19g00359 . 79 280 Tify Gene Family AT1G51600 57.3 1.1e-53 207.6
Car11g01171 . 86 287 Tify Gene Family AT1G51600 57.1 5.5e-53 205.3
Car05g00483 . 348 523 Tify Gene Family AT1G51600 59.6 1.1e-50 197.6
Car12g00188 . 412 585 Tify Gene Family AT1G51600 55.8 1.7e-46 183.7
Car17g00597 CST 1 230 Tify Gene Family AT3G21175 56.1 3.7e-59 225.3
Car08g00734 CST 2 230 Tify Gene Family AT3G21175 55.5 3.8e-56 215.3
Car17g00183 CST 1 180 Tify Gene Family AT4G14713 52.1 4.0e-45 178.7
Car08g01006 CST 1 180 Tify Gene Family AT4G14713 52.1 2.6e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3984 PF06203 CCT 1.50E-14 CL0281 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car08g00734 Car_Chr08 FPKM 13.828091 17.285036 21.581203 22.118431 16.376162 16.102631 15.11617 24.524231 24.793732 25.195108