Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00734 GAAATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAGTCATGCACAGCATTCGATGCACACACAATCTGTGCAAGAACAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAATGAAGGTCACGGTATCATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGTGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCATATCAGGGTCAAGTTTATGTTTTTGATTCTGTCTCGCCCGAAAAGGTTCAAGCCGTGTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGTGTTCCCTCAATCCCAATAACTAATCAACCAAATGATAGGCATCTCACTGATGAAGCATTTAACCAGGCACTTGCCATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAGTTCACATCTTCCAAACCCATTCAGGAAGATTCATTATCGGCCACAACAAGTTGGGAATCAAATGAGACTTGGTGTTCTGATGGAAATGGATCCCATCAACAAGAAATTCTCTGTCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCCTGCGGACTCATGTGGGCAAACAAGCTTCAAGGATCTTATCAATATAGTAAATCTGAGACCCTGGACATAAATGTAGATGAATCATTTATTGATCTCTCGGCCTCTAACACTTATTGCAAGCATGGCCAATCCACTGCTTATTCATTTTTCCCCTCAACGAGAACCCTAGATTCTCCTCCTTCTGTCTGGGCTCCTACCATCGTGAAAGTTGAGCATAAGCTCCTCAAGTATATTTCTTCTGTATTGGTCAGAGTTCAGTATGACTCTGAAAATGATATGCTGCATTTAGCTGCTCTGATTTCCGTTCTAGAAATTCTTTTCCTGAAGACTGTTAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAAGCTTCAACAGGAATGAGAATGTTGTGCAGAATGGAGATTCTGAGTCCAATCCAAAAAGTGCATAGGAATTGTGACAGGATTGTGTCTTCCTGCAGAAGACGAAGGCGTGGACGAGTCTCTGGGCAGCCCGAATCTGATCTGGCGTGCCAGACACGATCGCTTTGCCATCAAACATCCCAGGTTTAG 1344 44.79 EMDGIHASDGRMHMSHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPNDRHLTDEAFNQALAIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIQEDSLSATTSWESNETWCSDGNGSHQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKLQGSYQYSKSETLDINVDESFIDLSASNTYCKHGQSTAYSFFPSTRTLDSPPSVWAPTIVKVEHKLLKYISSVLVRVQYDSENDMLHLAALISVLEILFLKTVRELCGTSQKHQTRVDKLQASTGMRMLCRMEILSPIQKVHRNCDRIVSSCRRRRRGRVSGQPESDLACQTRSLCHQTSQV 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4721919 4728027 + Carg13882-RA Car08g00734 153308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00734 447 Pfam tify domain 85 113 IPR010399 -
Car08g00734 447 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Car08g00734 447 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Car08g00734 447 Pfam CCT motif 155 197 IPR010402 GO:0005515
Car08g00734 447 ProSiteProfiles Tify domain profile. 79 114 IPR010399 -
Car08g00734 447 Pfam GATA zinc finger 231 265 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00734 Car17g00597 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00734 Car-Chr8:4721919 Car11g01171 Car-Chr11:9390946 3.04E-64 dispersed
Car17g00597 Car-Chr17:5676352 Car08g00734 Car-Chr8:4721919 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3984 PF06203 CCT 1.50E-14 CL0281 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00734 - - csv:101215755 508.834