Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car08g00777 | ATGGGCTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCCACAATATTCCTCCATTTACTCTCTCTCCTCGACTTACTAAAACGCCTAATTCTGTACCTGTTCCGCCTCCTCGGCCTCCCGGAATTTCTCCACTCCGACGCCGCCGTCTCGCGGGAGGTTGGGATTCCGTTGAACCCGCCAGCCTCCGCCGTGGTCCTGCGCGAATTCCTCCCCGTAGTGAAATTCTCGGATGTCCCCCAGGCGGCGGAGGCGGCGGCAGAGAGCTGCGCCGTATGCCTGTACGAATTCGAGGGAGCAGAGGAGATCCGGTGGCTGACGAACTGCAAGCACATATTCCATAGAGGGTGTGTGGACCGTTGGATGGATCATGATCAGAAGACATGTCCGCTTTGTAGAACGCCGTTCGTGCCTGATGGGATGATGGATGAGTTCAATCAACGGCTGTGGGCCGCCTCTGGAATTGCTGAGTTTGATTCTGAGTTCAACTCGGTTTTAGGTTAG | 501 | 56.09 | MGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSREVGIPLNPPASAVVLREFLPVVKFSDVPQAAEAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVLG | 166 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 5086733 | 5087233 | + | Carg13839-RA | Car08g00777 | 153351 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car08g00777 | 166 | Pfam | Ring finger domain | 88 | 132 | IPR001841 | - | |
| Car08g00777 | 166 | ProSiteProfiles | Zinc finger RING-type profile. | 89 | 132 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car08g00777 | Car-Chr8:5086733 | Car14g01857 | Car-Chr14:14393401 | 6.77E-43 | dispersed | |
| Car15g01120 | Car-Chr15:8843502 | Car08g00777 | Car-Chr8:5086733 | 2.84E-40 | wgd | |
| Car17g00414 | Car-Chr17:2753942 | Car08g00777 | Car-Chr8:5086733 | 4.34E-60 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car08g00777 | K16281 | - | csv:101220424 | 243.047 |