Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00794 ATGGATCGAAGAGATCCAATGGCGTTATCGGGGTCGCAATCGTTCTATATTCAGAGGGGAATGAGCAATTCTGGCTCTGGAGCACAGGGCATGCGTTCCTCTACTAACCCAAATATGTCTTTTCAGACCAACGCTGGAGGCAACAATGTTGGATCAGGCTTGCCAATGGACCCTAACCCTGCTATTTCACCTTATGGTGCCAATGTAGGAGCTCAATCTGGTGGAATGGTTGCGAGTGAACCGGTGAAACGGAAGCGAGGTCGGCCTCGCAAATATGGAACTGAAGGAACTGTGTCTTTGGCACTGTCCCCCTCTCCATCTGCCCCTAATCCAGCCAGTGTTGGCTCCTCGCCGAAGCGGGGTAGGGGACGGCCTCCCGGGTCGGGAAAGAAGCAACAGTTAGCTTCTCTTGGTGAACCACTCTCTGGTTCAGCTGGCATGGGTTTTACTCCACATGTTATAACCATTGGAGTAGGAGAAGATGTCGCTGCCAAAATTATGTCGTTTTCACAACAGGGACCAAGAATTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTGACTCTTCGTCAACCTTCGACTTCAGGAGGCACAGTCACGTACGAGGGTCGTTTTGAGATAATATGTCTGTCGGGCTCGTACTCGCTTGGGGATATATCTGGTTCGAGGAACCGCACTGGTGGTCTGAGTGTCTCCCTTGCGAGCCCTGATGGTCGTGTTATCGGTGGTGGTGTAGGAGGAGCACTTATCGCAGCAACCCCGGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGAAGTTCAAAGTCGAAGTACAAGAAAAGGGAAGCTGTGGAAGGTGTGATAGACTCGGATCATCAGGCGGTAGATCACGCAGTGGCGATCGCAAACGTGCAGCAGAATCAGAATCAGAATCAGAATATGACTCCGACCTCCCCAGTTAGTATGTGGCCGTCGTCGCAGTCCCTGGACATGCGCAACGCACACATGGACATCGATCTGATGCGCGGGTGA 1017 52.02 MDRRDPMALSGSQSFYIQRGMSNSGSGAQGMRSSTNPNMSFQTNAGGNNVGSGLPMDPNPAISPYGANVGAQSGGMVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAPNPASVGSSPKRGRGRPPGSGKKQQLASLGEPLSGSAGMGFTPHVITIGVGEDVAAKIMSFSQQGPRIVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYSLGDISGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAVEGVIDSDHQAVDHAVAIANVQQNQNQNQNMTPTSPVSMWPSSQSLDMRNAHMDIDLMRG 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5327427 5330908 + Carg27101-RA Car08g00794 153368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00794 338 MobiDBLite consensus disorder prediction 11 50 - -
Car08g00794 338 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Car08g00794 338 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Car08g00794 338 Gene3D - 151 283 - -
Car08g00794 338 MobiDBLite consensus disorder prediction 1 143 - -
Car08g00794 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 313 IPR039605 GO:0003680
Car08g00794 338 MobiDBLite consensus disorder prediction 98 114 - -
Car08g00794 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Car08g00794 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 313 - -
Car08g00794 338 CDD DUF296 150 264 IPR005175 -
Car08g00794 338 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Car08g00794 338 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677
Car08g00794 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
Car08g00794 338 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00794 Car17g00389 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00844 Car-Chr5:8331160 Car08g00794 Car-Chr8:5327427 3.62E-68 dispersed
Car08g00794 Car-Chr8:5327427 Car02g01272 Car-Chr2:8526097 3.13E-67 dispersed
Car15g01102 Car-Chr15:8671648 Car08g00794 Car-Chr8:5327427 3.92E-73 wgd
Car17g00389 Car-Chr17:2588607 Car08g00794 Car-Chr8:5327427 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00794 - - csv:101203138 550.436