Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00801 ATGAGTTTTGGGGGTTTTCTTGACGGCGGCGGTGGAGGAAGCGGTGGTGCTCGAATCGTAGCCGATTTATCTTACGTCAACAACAACACCACTGCTTCCAATAATAACCCCACCGGCGGTATCCCTGGTGGTGGAATTATGCCATCTGGTGCAGTCGCTCCGCCGCGCCTTATAACTCAATCTCTCACCAAATCGATGTTTAACTCTCCTGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAAGGGGATTTGGCTGCCCGACTACCCGAGGGTTTCGAGCACAATGTTGGGAGAAGAGGCAGAGATGAAGAGCACGAGAGTAGATCTGGAAGTGACAACATGGACGGCGGCTCCGGCGACGACCAAGACGCCGCCGACAATCCTCCGAGGAAGAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAATCTGTCTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTGGAGTTGAGTCGGAGGCTGTGCTTAGAAACCAGACAAGTTAAGTTTTGGTTCCAAAATCGTCGGACCCAGATGAAGACCCAATTGGAACGCCATGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCTATGAGGAATCCGATCTGTTCAAACTGTGGTGGTCCAGCAATTATCGGAGAGATTTCGCTGGAAGAGCAGCAGTTAAGGATCGAGAATGCTCGTTTGAAGGATGAGTTGGACCGGGTTTGCACGCTAGCTGGGAAATTCCTTGGAAGACCGATTTCGTCCTTGGCTAACTCCATTGCACCTCCATTGCCAAGCTCGAGTTTGGAACTGGGAGTTGGGAGTAATGGATTTGGGAGTTTGACCATGGCGACGTCGATGCCTATTGGACCGGACTTTGGAGGCGGGTTGTCCGGTAATCTGTCTGTTGTTCAGCCACCTGTGAGGTCAACACCAGGGATGGGACTCGATCGGTCGGTGGAGCGATCTATGCTACTCGAGCTTGCTTTGGCTGCCATGGATGAATTAGTTAAAATGGCTCAGACTGATGAGCCTCTTTGGATTGGGAGCTTGGAAGGTGGAAGAGAAATACTGAACCAGGAAGAATACATGAGGACATTCACTCCTTGCATCGGCATGAAACCTAACGGTTTCGTTACCGAGGCCTCGAGAGAAACTGGCATGGTGATTATCAACAGCCTTGCGCTCGTCGAGACATTGATGGATGCGGTAAACATCTAA 1263 50.83 MSFGGFLDGGGGGSGGARIVADLSYVNNNTTASNNNPTGGIPGGGIMPSGAVAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGRDEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELESVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCTLAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLSVVQPPVRSTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDAVNI 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5389491 5391311 + Carg27108-RA Car08g00801 153375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00801 420 Pfam START domain 341 417 IPR002913 GO:0008289
Car08g00801 420 ProSiteProfiles START domain profile. 332 420 IPR002913 GO:0008289
Car08g00801 420 MobiDBLite consensus disorder prediction 94 113 - -
Car08g00801 420 Coils Coil 184 216 - -
Car08g00801 420 Coils Coil 231 251 - -
Car08g00801 420 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Car08g00801 420 MobiDBLite consensus disorder prediction 93 140 - -
Car08g00801 420 Pfam Homeodomain 133 188 IPR001356 GO:0003677
Car08g00801 420 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00801 Car-Chr8:5389491 Car18g01138 Car-Chr18:11310355 1.92E-123 dispersed
Car17g00018 Car-Chr17:71992 Car08g00801 Car-Chr8:5389491 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3989 PF01852 START 1.90E-07 CL0209 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00801 K09338 - csv:101222248 733.406