Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g00826 ATGGGGAGAGGAAGAGTTGAACTGAAGCTAATAGAGAACAAAATCAACCGCCAAGTCACTTTCTCGAAGCGCCGTAATGGTCTCCTCAAAAAAGCTTATGAACTCTCTGTTCTTTGCGATGCTGAGGTCGCTCTCATCATCTTCTCCAGCCGAGGCAAGCTCTATGAATTCGGCAGCGCTGGTACGACCAAGACACTGGAGCGATACCAACGTTGTTGCTTCTCTCCCCAAGACAATTACAGCGAACGAGAATCCCAGAACTGGTTCGTGGAAATCTCGAAACTGAAAGCTAAATATGAATCGCTATGTCGCACTCATAGGCACTTGCTTGGGGAAGATCTTGGACCATTGAGTGTTAAGGAGCTCCAAAATCTTGAAAAGCAACTTGAAGCAGCTCTTGCTCAAGCTAGACAAAGGAAGACTCAGATGATGACGGAACAGATGGAAGATCTACGAAGAAAGGAACGACAACTCGGGGATCTGAATCGAGAGCTGAAACTCAAGCTCGAGACAGAGGGACAAAATCTTAAAGCCATCCAAAGTTTTTGGAGCTCAAGTTCATCAGCTGCTGAACATGGCAACACCTTCCCCTTGTATCCTTCACAACCTAGCACCATTGAGTATCAACACGAACCTATCTTACAAATCGGGTACCAAAATTATTTCTCAGAAGAGGGGCCATCTGTTCATATGGGTTATTTGAATTCCACTTAA 714 45.24 MGRGRVELKLIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTKTLERYQRCCFSPQDNYSERESQNWFVEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQMMTEQMEDLRRKERQLGDLNRELKLKLETEGQNLKAIQSFWSSSSSAAEHGNTFPLYPSQPSTIEYQHEPILQIGYQNYFSEEGPSVHMGYLNST 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5519380 5521643 + Carg11098-RA Car08g00826 153400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g00826 237 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g00826 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Car08g00826 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car08g00826 237 Coils Coil 119 171 - -
Car08g00826 237 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g00826 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00826 Car-Chr8:5519380 Car14g01026 Car-Chr14:8791655 1.48E-67 dispersed
Car13g00658 Car-Chr13:8107063 Car08g00826 Car-Chr8:5519380 1.01E-45 dispersed
Car18g00235 Car-Chr18:1344728 Car08g00826 Car-Chr8:5519380 2.64E-42 dispersed
Car16g00140 Car-Chr16:792559 Car08g00826 Car-Chr8:5519380 2.05E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3992 PF01486 K-box 2.70E-28 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g00826 K09264 - csv:101219421 353.599